CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh1_pg.C_160206
(
Cochliobolus heterostrophus C5
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
estExt_fgenesh1_pg.C_160206
T04992_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pg.C_160206
CCCH ZF
351
375
SHVPCKFYRQGACQAGKACPFLHSD
estExt_fgenesh1_pg.C_160206
CCCH ZF
380
403
ERAPCKYFTKGNCKFGQKCALAHI
Links
Other
CCCH ZF
family RBPs
Other
Cochliobolus heterostrophus C5
RBPs
42 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SNOG_02658
Stagonospora nodorum
SNOG_02658
N
1.000
AB08315.1
Alternaria brassicicola
AB08315.1
N
1.000
PTRG_01963
Pyrenophora tritici repentis
PTRG_01963
N
1.000
EAT89389.2
Phaeosphaeria nodorum
EAT89389.2
N
1.000
ANIA_03447
Aspergillus nidulans
CADANIAG00009587
N
0.860
UREG_06970
Uncinocarpus reesii
UREG_06970
N
0.840
CIMG_10872
Coccidioides immitis
CIMG_10872
N
0.840
CPSG_06815
Coccidioides posadasii
CPSG_06815
N
0.840
AFLA_103810
Aspergillus flavus
CADAFLAG00012116
N
0.840
HCAG_10294
Histoplasma capsulatum
HCAG_10294
N
0.840
AFUA_3G05570
Aspergillus fumigatus
CADAFUAG00005783
N
0.840
NFIA_071620
Neosartorya fischeri
CADNFIAG00006536
N
0.840
fgenesh1_pm.00118_#_26
Aspergillus carbonarius
fgenesh1_pm.00118_#_26
N
0.840
ATEG_08978
Aspergillus terreus
CADATEAG00006440
N
0.840
AO090020000028
Aspergillus oryzae
CADAORAG00006562
N
0.840
An11g11070
Aspergillus niger
CADANGAG00009424
N
0.840
PMAA_005110
Penicillium marneffei
PMAA_005110
N
0.840
PABG_05614
Paracoccidioides brasiliensis
PABG_05614
N
0.820
TERG_02518
Trichophyton rubrum
TERG_02518
N
0.820
MGYG_05636
Microsporum gypseum
MGYG_05636
N
0.820
TEQG_01582
Trichophyton equinum
TEQG_01582
N
0.820
MCYG_08235
Microsporum canis
MCYG_08235
N
0.820
Pc20g08250
Penicillium chrysogenum
Pc20g08250
N
0.820
ACLA_033580
Aspergillus clavatus
CADACLAG00003610
N
0.804
GSTUMT00003772001
Tuber melanosporum
GSTUMT00003772001
N
0.800
YALI0B12540g
Yarrowia lipolytica
YALI0B12540g
N
0.760
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.745
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.740
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.740
SJAG_03191
Schizosaccharomyces japonicus
SJAG_03191
N
0.725
ADR062W
Ashbya gossypii
ADR062W
N
0.725
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.720
XP_002493509.1
Pichia pastoris
XP_002493509.1
N
0.720
CLUG_02022
Candida lusitaniae
CLUG_02022
N
0.720
CTRG_02259
Candida tropicalis
CTRG_02259
N
0.706
estExt_fgenesh1_kg.C_60003
Myceliophthora thermophila
estExt_fgenesh1_kg.C_60003
N
0.706
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.700
gw1.2.2109.1
Mucor circinelloides
gw1.2.2109.1
N
0.700
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.700
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.700
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.700
orf19.7385
Candida albicans
orf19.7385
N
0.700