CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ADR062W
(
Ashbya gossypii
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ADR062W
T05936_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Q75A57
CCCH ZF
70
95
YSHVPCKFFRQGACQAGSSCPFSHSL
Q75A57
CCCH ZF
101
124
DQTPCKYFEKGTCKFGAKCANAHI
Links
Other
CCCH ZF
family RBPs
Other
Ashbya gossypii
RBPs
66 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.920
KLTH0E11836g
Kluyveromyces thermotolerans
KLTH0E11836g
N
0.880
YALI0B12540g
Yarrowia lipolytica
YALI0B12540g
N
0.820
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.800
ZYRO0F08690g
Zygosaccharomyces rouxii
ZYRO0F08690g
N
0.784
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.780
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.780
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.780
ATEG_08978
Aspergillus terreus
CADATEAG00006440
N
0.765
An11g11070
Aspergillus niger
CADANGAG00009424
N
0.765
AO090020000028
Aspergillus oryzae
CADAORAG00006562
N
0.765
estExt_Genewise1Plus.C_130028
Neurospora discreta
estExt_Genewise1Plus.C_130028
N
0.765
PABG_05614
Paracoccidioides brasiliensis
PABG_05614
N
0.765
UREG_06970
Uncinocarpus reesii
UREG_06970
N
0.765
AFLA_103810
Aspergillus flavus
CADAFLAG00012116
N
0.765
NFIA_071620
Neosartorya fischeri
CADNFIAG00006536
N
0.765
AFUA_3G05570
Aspergillus fumigatus
CADAFUAG00005783
N
0.765
HCAG_10294
Histoplasma capsulatum
HCAG_10294
N
0.765
NCU05007
Neurospora crassa
NCU05007
N
0.765
Pc20g08250
Penicillium chrysogenum
Pc20g08250
N
0.765
GSTUMT00003772001
Tuber melanosporum
GSTUMT00003772001
N
0.765
fgenesh1_pm.00118_#_26
Aspergillus carbonarius
fgenesh1_pm.00118_#_26
N
0.765
estExt_Genewise1.C_110035
Neurospora tetrasperma
estExt_Genewise1.C_110035
N
0.765
CPSG_06815
Coccidioides posadasii
CPSG_06815
N
0.765
PMAA_005110
Penicillium marneffei
PMAA_005110
N
0.765
CIMG_10872
Coccidioides immitis
CIMG_10872
N
0.765
25080_YPL054W
Saccharomyces bayanus
25080_YPL054W
N
0.760
XP_002493509.1
Pichia pastoris
XP_002493509.1
N
0.760
TEQG_01582
Trichophyton equinum
TEQG_01582
N
0.745
TERG_02518
Trichophyton rubrum
TERG_02518
N
0.745
ANIA_03447
Aspergillus nidulans
CADANIAG00009587
N
0.745
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.745
e_gw1.29.29.1
Trichoderma virens
e_gw1.29.29.1
N
0.745
MCYG_08235
Microsporum canis
MCYG_08235
N
0.745
estExt_fgenesh5_pg.C_100355
Trichoderma reesei
estExt_fgenesh5_pg.C_100355
N
0.745
MGYG_05636
Microsporum gypseum
MGYG_05636
N
0.745
CHGG_00049
Chaetomium globosum
CHGG_00049
N
0.745
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.745
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.740
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.740
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.740
22086_YPL054W
Saccharomyces mikatae
22086_YPL054W
N
0.740
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.740
orf19.7385
Candida albicans
orf19.7385
N
0.740
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.740
ACLA_033580
Aspergillus clavatus
CADACLAG00003610
N
0.731
AB08315.1
Alternaria brassicicola
AB08315.1
N
0.725
estExt_Genewise1.C_60695
Trichoderma atroviride
estExt_Genewise1.C_60695
N
0.725
estExt_Genewise1.C_81229
Thielavia terrestris
estExt_Genewise1.C_81229
N
0.725
gw1.28.197.1
Nectria haematococca
gw1.28.197.1
N
0.725
EAT89389.2
Phaeosphaeria nodorum
EAT89389.2
N
0.725
SNOG_02658
Stagonospora nodorum
SNOG_02658
N
0.725
Pa_5_7490
Podospora anserina
Pa_5_7490
N
0.725
e_gw1.10.437.1
Cryphonectria parasitica
e_gw1.10.437.1
N
0.725
estExt_fgenesh1_pg.C_160206
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_160206
N
0.725
GLRG_01727
Colletotrichum graminicola
GLRG_01727
N
0.725
PTRG_01963
Pyrenophora tritici repentis
PTRG_01963
N
0.725
estExt_fgenesh1_kg.C_60003
Myceliophthora thermophila
estExt_fgenesh1_kg.C_60003
N
0.725
CLUG_02022
Candida lusitaniae
CLUG_02022
N
0.720
CTRG_02259
Candida tropicalis
CTRG_02259
N
0.720
MGG_03480
Magnaporthe oryzae
MGG_03480
N
0.706
SJAG_03191
Schizosaccharomyces japonicus
SJAG_03191
N
0.706
A7TTU4_VANPO
Vanderwaltozyma polyspora
A7TTU4_VANPO
N
0.700
CPAG_02338
Candida parapsilosis
CPAG_02338
N
0.700
estExt_Genewise1Plus.C_chr_60126
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_60126
N
0.700
EuGene12000543
Heterobasidion annosum
EuGene12000543
N
0.700