fgenesh1_pg.sca_1_chr1_3_0000632 (Nectria haematococca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pg.sca_1_chr1_3_0000632 T51978_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.sca_1_chr1_3_0000632 RRM 10 80

Links

Other RRM family RBPs
Other Nectria haematococca RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB08285.1 Alternaria brassicicola AB08285.1 N 0.704
BC1G_15665 Botrytis cinerea BC1G_15665 N 0.859
CHGG_01583 Chaetomium globosum CHGG_01583 N 0.873
EAT89416.2 Phaeosphaeria nodorum EAT89416.2 N 0.718
estExt_fgenesh3_kg.C_70160 Neurospora discreta estExt_fgenesh3_kg.C_70160 N 0.859
estExt_Genewise1Plus.C_20994 Myceliophthora thermophila estExt_Genewise1Plus.C_20994 N 0.873
estExt_Genewise1Plus.C_50197 Neurospora tetrasperma estExt_Genewise1Plus.C_50197 N 0.859
estExt_Genewise1Plus.C_chr_61262 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_61262 N 0.000
e_gw1.4.931.1 Thielavia terrestris e_gw1.4.931.1 N 0.831
e_gw1.6.1433.1 Cryphonectria parasitica e_gw1.6.1433.1 N 0.845
fgenesh1_pg.C_scaffold_8000060 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_8000060 N 0.000
GLRG_10397 Colletotrichum graminicola GLRG_10397 N 0.873
GSTUMT00004863001 Tuber melanosporum GSTUMT00004863001 N 0.817
MGG_09885 Magnaporthe oryzae MGG_09885 N 0.845
NCU03311 Neurospora crassa NCU03311 N 0.859
PTRG_02061 Pyrenophora tritici repentis PTRG_02061 N 0.000
SNOG_02685 Stagonospora nodorum SNOG_02685 N 0.718
SS1G_09907 Sclerotinia sclerotiorum SS1G_09907 N 0.859
VDAG_04254 Verticillium dahliae VDAG_04254 N 0.873