Glyma08g01040.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma08g01040.1 T52711_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma08g01040.1 RRM 256 321
Glyma08g01040.1 RRM 350 415
Glyma08g01040.1 RRM 790 861

Links

Other RRM family RBPs
Other Glycine max RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28350.m000106 Ricinus communis 28350.m000106 N 0.775
29693.m002077 Ricinus communis 29693.m002077 N 0.750
30147.m014409 Ricinus communis 30147.m014409 N 0.804
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.745
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.745
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.701
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.745
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.761
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.765
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.711
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.745
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.804
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.755
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.755
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.721
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.721
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.775
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.775
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.775
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.775
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.775
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.770
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.770
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.760
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.780
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.804
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.760
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.765
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.760
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.775
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.765
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.775
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.755
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.775
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.779
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.779
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.717
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.779
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.799
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.804
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.784
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.701
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.745
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.761
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.760
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.863
mgf000415m Mimulus guttatus mgf000415m N 0.784
mgf005765m Mimulus guttatus mgf005765m N 0.766
mgf014747m Mimulus guttatus mgf014747m N 0.771
mgf015667m Mimulus guttatus mgf015667m N 0.784
mgf023970m Mimulus guttatus mgf023970m N 0.706
PK15886.1 Cannabis sativa PK15886.1 N 0.804
PK19379.1 Cannabis sativa PK19379.1 N 0.775
PK24656.1 Cannabis sativa PK24656.1 N 0.765
PK25465.1 Cannabis sativa PK25465.1 N 0.794
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.805
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.770
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.779
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.775
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.789
ppa000845m Prunus persica ppa000845m N 0.789
ppa000997m Prunus persica ppa000997m N 0.775
ppa001307m Prunus persica ppa001307m N 0.775
ppa001327m Prunus persica ppa001327m N 0.784
SB04G021130 Sorghum bicolor Sb04g021130 N 0.727
SB10G000350 Sorghum bicolor Sb10g000350 N 0.789