gw1.21.172.1 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.21.172.1 T53167_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.21.172.1 RRM 19 89

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29751.m001798 Ricinus communis 29751.m001798 N 0.704
29784.m000370 Ricinus communis 29784.m000370 N 0.761
30190.m011248 Ricinus communis 30190.m011248 N 0.746
AT4G35785 Arabidopsis thaliana AT4G35785-TAIR-G N 0.704
BGIOSIBSE038661 Oryza indica BGIOSIBSE038661 N 0.704
cassava28819.valid.m1 Manihot esculenta cassava28819.valid.m1 N 0.775
cassava28820.valid.m1 Manihot esculenta cassava28820.valid.m1 N 0.775
cassava28821.valid.m1 Manihot esculenta cassava28821.valid.m1 N 0.775
cassava35282.valid.m1 Manihot esculenta cassava35282.valid.m1 N 0.746
Cucsa.043980 Cucumis sativus Cucsa.043980 N 0.789
e_gw1.234.40.1 Physcomitrella patens e_gw1.234.40.1 N 0.845
e_gw1.25.252.1 Selaginella moellendorfii e_gw1.25.252.1 N 0.761
e_gw1.3.92.1 Selaginella moellendorfii e_gw1.3.92.1 N 0.761
Glyma01g36670.1 Glycine max Glyma01g36670.1 N 0.732
Glyma02g04980.1 Glycine max Glyma02g04980.1 N 0.746
Glyma08g45200.1 Glycine max Glyma08g45200.1 N 0.718
Glyma10g41320.1 Glycine max Glyma10g41320.1 N 0.704
Glyma16g23010.1 Glycine max Glyma16g23010.1 N 0.746
GSVIVG00005197001 Vitis vinifera GSVIVG00005197001 N 0.704
GSVIVG00019390001 Vitis vinifera GSVIVG00019390001 N 0.761
gw1.19.297.1 Selaginella moellendorfii gw1.19.297.1 N 0.746
gw1.20.902.1 Selaginella moellendorfii gw1.20.902.1 N 0.789
gw1.27.117.1 Physcomitrella patens gw1.27.117.1 N 0.845
gw1.3.275.1 Physcomitrella patens gw1.3.275.1 N 0.817
LjB08M07.70.nc Lotus japonicus LjB08M07.70.nc N 0.718
LOC_Os08g29650 Oryza sativa LOC_Os08g29650 N 0.704
MDP0000304811 Malus x domestica MDP0000304811 N 0.704
Medtr5g023040 Medicago truncatula Medtr5g023040 N 0.761
Medtr8g088990 Medicago truncatula Medtr8g088990 N 0.704
mgf011871m Mimulus guttatus mgf011871m N 0.732
PDK_20s1416111g002 Phoenix dactylifera PDK_20s1416111g002 N 0.761
PDK_20s1771821g002 Phoenix dactylifera PDK_20s1771821g002 N 0.732
PK05232.1 Cannabis sativa PK05232.1 N 0.732
PK15963.1 Cannabis sativa PK15963.1 N 0.746
B9GWT8_POPTR Populus trichocarpa POPTR_0003s13030 N 0.761
B9MX89_POPTR Populus trichocarpa POPTR_0005s10780 N 0.789
ppa010685m Prunus persica ppa010685m N 0.718
ppa011480m Prunus persica ppa011480m N 0.746
XM_002867008.1 Arabidopsis lyrata scaffold_700530.1 N 0.718