B9MX89_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0005s10780 T45510_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s10780.1 RRM 73 143
POPTR_0005s10780.2 RRM 60 130

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.043980 Cucumis sativus Cucsa.043980 N 0.958
29784.m000370 Ricinus communis 29784.m000370 N 0.944
Glyma01g36670.1 Glycine max Glyma01g36670.1 N 0.915
cassava35282.valid.m1 Manihot esculenta cassava35282.valid.m1 N 0.901
Medtr5g023040 Medicago truncatula Medtr5g023040 N 0.901
PK15963.1 Cannabis sativa PK15963.1 N 0.901
Glyma02g04980.1 Glycine max Glyma02g04980.1 N 0.873
Glyma16g23010.1 Glycine max Glyma16g23010.1 N 0.873
PDK_20s1771821g002 Phoenix dactylifera PDK_20s1771821g002 N 0.873
GSVIVG00005197001 Vitis vinifera GSVIVG00005197001 N 0.859
mgf018316m Mimulus guttatus mgf018316m N 0.859
mgf000980m Mimulus guttatus mgf000980m N 0.859
ppa010685m Prunus persica ppa010685m N 0.859
Medtr8g088990 Medicago truncatula Medtr8g088990 N 0.859
mgf010666m Mimulus guttatus mgf010666m N 0.859
XM_002867008.1 Arabidopsis lyrata scaffold_700530.1 N 0.845
MDP0000304811 Malus x domestica MDP0000304811 N 0.845
MDP0000285029 Malus x domestica MDP0000285029 N 0.831
AT4G35785 Arabidopsis thaliana AT4G35785-TAIR-G N 0.817
gw1.21.172.1 Physcomitrella patens gw1.21.172.1 N 0.789
B9GWT8_POPTR Populus trichocarpa POPTR_0003s13030 N 0.761
cassava28820.valid.m1 Manihot esculenta cassava28820.valid.m1 N 0.746
cassava28819.valid.m1 Manihot esculenta cassava28819.valid.m1 N 0.746
cassava28821.valid.m1 Manihot esculenta cassava28821.valid.m1 N 0.746
LOC_Os08g29650 Oryza sativa LOC_Os08g29650 N 0.732
LOC_Os06g50890 Oryza sativa LOC_Os06g50890 N 0.732
BGIOSIBCE023334 Oryza indica BGIOSIBCE023334 N 0.732
BGIOSIBSE038661 Oryza indica BGIOSIBSE038661 N 0.732
30190.m011248 Ricinus communis 30190.m011248 N 0.732
ppa011480m Prunus persica ppa011480m N 0.718
e_gw1.234.40.1 Physcomitrella patens e_gw1.234.40.1 N 0.704
LjB08M07.70.nc Lotus japonicus LjB08M07.70.nc N 0.704
gw1.27.117.1 Physcomitrella patens gw1.27.117.1 N 0.704
SB10G030460 Sorghum bicolor Sb10g030460 N 0.704