CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ame_R015170
(
Ailuropoda melanoleuca
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Ame_R015170
T55613_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R015170
RRM
332
402
IWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAHLHRTELHGQLIS
Links
Other
RRM
family RBPs
Other
Ailuropoda melanoleuca
RBPs
115 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
30075.m001186
Ricinus communis
30075.m001186
N
0.000
cassava24157.valid.m1
Manihot esculenta
cassava24157.valid.m1
N
0.000
cassava31871.valid.m1
Manihot esculenta
cassava31871.valid.m1
N
0.000
chr4.CM0229.230.nc
Lotus japonicus
chr4.CM0229.230.nc
N
0.000
Cucsa.048210
Cucumis sativus
Cucsa.048210
N
0.000
estExt_fgenesh1_pg.C_2810007
Physcomitrella patens
estExt_fgenesh1_pg.C_2810007
N
0.000
e_gw1.6.664.1
Selaginella moellendorfii
e_gw1.6.664.1
N
0.000
Glyma07g35050.1
Glycine max
Glyma07g35050.1
N
0.000
Glyma20g02910.1
Glycine max
Glyma20g02910.1
N
0.000
GRMZM2G003527
Zea mays
GRMZM2G003527
N
0.000
GRMZM2G145034
Zea mays
GRMZM2G145034
N
0.000
GSVIVG00021628001
Vitis vinifera
GSVIVG00021628001
N
0.000
LOC_Os01g34190
Oryza sativa
LOC_Os01g34190
N
0.000
MDP0000162585
Malus x domestica
MDP0000162585
N
0.000
Medtr4g115110
Medicago truncatula
Medtr4g115110
N
0.000
mgf008467m
Mimulus guttatus
mgf008467m
N
0.000
PDK_20s1603131g002
Phoenix dactylifera
PDK_20s1603131g002
N
0.000
PK13606.1
Cannabis sativa
PK13606.1
N
0.000
B9GGD6_POPTR
Populus trichocarpa
POPTR_0001s38150
N
0.000
ppa007087m
Prunus persica
ppa007087m
N
0.000
SB10G003990
Sorghum bicolor
Sb10g003990
N
0.000