chr1.CM0410.300.nd (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr1.CM0410.300.nd T55808_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0410.300.nd RRM 42 112

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30138.m003973 Ricinus communis 30138.m003973 N 0.789
GR-RBP5 Arabidopsis thaliana AT1G74230-TAIR-G N 0.718
cassava29351.valid.m1 Manihot esculenta cassava29351.valid.m1 N 0.775
cassava29352.valid.m1 Manihot esculenta cassava29352.valid.m1 N 0.775
cassava43399.valid.m1 Manihot esculenta cassava43399.valid.m1 N 0.789
Cucsa.113230 Cucumis sativus Cucsa.113230 N 0.746
Cucsa.198260 Cucumis sativus Cucsa.198260 N 0.803
XM_002887486.1 Arabidopsis lyrata fgenesh2_kg.2__1690__AT1G74230.1 N 0.718
Glyma05g00400.1 Glycine max Glyma05g00400.1 N 0.718
Glyma08g26900.1 Glycine max Glyma08g26900.1 N 0.775
Glyma17g08630.1 Glycine max Glyma17g08630.1 N 0.718
Glyma18g50150.1 Glycine max Glyma18g50150.1 N 0.789
GSVIVG00007865001 Vitis vinifera GSVIVG00007865001 N 0.775
LjSGA_007064.1 Lotus japonicus LjSGA_007064.1 N 0.704
MDP0000635271 Malus x domestica MDP0000635271 N 0.732
mgf007732m Mimulus guttatus mgf007732m N 0.704
mgf012875m Mimulus guttatus mgf012875m N 0.704
mgf014059m Mimulus guttatus mgf014059m N 0.704
mgf016144m Mimulus guttatus mgf016144m N 0.704
PK15111.1 Cannabis sativa PK15111.1 N 0.732
B9I2R7_POPTR Populus trichocarpa POPTR_0012s05870 N 0.732
A9PIG6_POPTR Populus trichocarpa POPTR_0015s06810 N 0.704
ppa010113m Prunus persica ppa010113m N 0.704