Cucsa.198260 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.198260 T49587_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.198260.1 RRM 45 115
Cucsa.198260.2 RRM 45 115
Cucsa.198260.3 RRM 45 115
Cucsa.198260.4 RRM 45 115
Cucsa.198260.5 RRM 1 46

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30138.m003973 Ricinus communis 30138.m003973 N 0.915
GSVIVG00007865001 Vitis vinifera GSVIVG00007865001 N 0.901
cassava29352.valid.m1 Manihot esculenta cassava29352.valid.m1 N 0.887
cassava29351.valid.m1 Manihot esculenta cassava29351.valid.m1 N 0.887
B9I2R7_POPTR Populus trichocarpa POPTR_0012s05870 N 0.873
cassava43399.valid.m1 Manihot esculenta cassava43399.valid.m1 N 0.873
PK15111.1 Cannabis sativa PK15111.1 N 0.831
ppa010113m Prunus persica ppa010113m N 0.831
MDP0000635271 Malus x domestica MDP0000635271 N 0.831
A9PIG6_POPTR Populus trichocarpa POPTR_0015s06810 N 0.817
mgf007732m Mimulus guttatus mgf007732m N 0.817
mgf014059m Mimulus guttatus mgf014059m N 0.803
mgf012875m Mimulus guttatus mgf012875m N 0.803
mgf016144m Mimulus guttatus mgf016144m N 0.803
PDK_20s1328241g004 Phoenix dactylifera PDK_20s1328241g004 N 0.803
chr1.CM0410.300.nd Lotus japonicus chr1.CM0410.300.nd N 0.803
Glyma05g00400.1 Glycine max Glyma05g00400.1 N 0.803
Cucsa.113230 Cucumis sativus Cucsa.113230 N 0.803
Glyma17g08630.1 Glycine max Glyma17g08630.1 N 0.803
XM_002864670.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002097 N 0.775
Glyma18g50150.1 Glycine max Glyma18g50150.1 N 0.761
XM_002887486.1 Arabidopsis lyrata fgenesh2_kg.2__1690__AT1G74230.1 N 0.761
GR-RBP5 Arabidopsis thaliana AT1G74230-TAIR-G N 0.761
GR-RBP3 Arabidopsis thaliana AT5G61030-TAIR-G N 0.761
MDP0000302917 Malus x domestica MDP0000302917 N 0.761
MDP0000255642 Malus x domestica MDP0000255642 N 0.761
Glyma08g26900.1 Glycine max Glyma08g26900.1 N 0.746
GRMZM2G150521 Zea mays GRMZM2G150521 N 0.746
LOC_Os10g17454 Oryza sativa LOC_Os10g17454 N 0.746
Medtr3g036670 Medicago truncatula Medtr3g036670 N 0.732
SB08G015580 Sorghum bicolor Sb08g015580 N 0.732
PDK_20s1742611g001 Phoenix dactylifera PDK_20s1742611g001 N 0.718
LjT12A09.50.nd Lotus japonicus LjT12A09.50.nd N 0.704
BGIOSIBCE036678 Oryza indica BGIOSIBCE036678 N 0.704
LOC_Os12g31800 Oryza sativa LOC_Os12g31800 N 0.704