ppa010113m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa010113m T58421_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa010113m RRM 45 115

Links

Other RRM family RBPs
Other Prunus persica RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000635271 Malus x domestica MDP0000635271 N 0.915
PK15111.1 Cannabis sativa PK15111.1 N 0.915
Glyma17g08630.1 Glycine max Glyma17g08630.1 N 0.859
Glyma05g00400.1 Glycine max Glyma05g00400.1 N 0.859
GSVIVG00007865001 Vitis vinifera GSVIVG00007865001 N 0.859
cassava29351.valid.m1 Manihot esculenta cassava29351.valid.m1 N 0.845
MDP0000302917 Malus x domestica MDP0000302917 N 0.845
MDP0000255642 Malus x domestica MDP0000255642 N 0.845
cassava29352.valid.m1 Manihot esculenta cassava29352.valid.m1 N 0.845
cassava43399.valid.m1 Manihot esculenta cassava43399.valid.m1 N 0.831
Cucsa.198260 Cucumis sativus Cucsa.198260 N 0.831
30138.m003973 Ricinus communis 30138.m003973 N 0.831
B9I2R7_POPTR Populus trichocarpa POPTR_0012s05870 N 0.817
ppa016842m Prunus persica ppa016842m N 0.803
PDK_20s1328241g004 Phoenix dactylifera PDK_20s1328241g004 N 0.789
mgf014059m Mimulus guttatus mgf014059m N 0.775
mgf012875m Mimulus guttatus mgf012875m N 0.775
mgf016144m Mimulus guttatus mgf016144m N 0.775
GR-RBP3 Arabidopsis thaliana AT5G61030-TAIR-G N 0.775
mgf007732m Mimulus guttatus mgf007732m N 0.775
A9PIG6_POPTR Populus trichocarpa POPTR_0015s06810 N 0.775
GR-RBP5 Arabidopsis thaliana AT1G74230-TAIR-G N 0.761
XM_002864670.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002097 N 0.761
XM_002887486.1 Arabidopsis lyrata fgenesh2_kg.2__1690__AT1G74230.1 N 0.761
Glyma08g26900.1 Glycine max Glyma08g26900.1 N 0.761
GRMZM2G150521 Zea mays GRMZM2G150521 N 0.746
LjT12A09.50.nd Lotus japonicus LjT12A09.50.nd N 0.746
Glyma18g50150.1 Glycine max Glyma18g50150.1 N 0.746
Medtr3g036670 Medicago truncatula Medtr3g036670 N 0.746
LOC_Os12g31800 Oryza sativa LOC_Os12g31800 N 0.732
BGIOSIBCE036678 Oryza indica BGIOSIBCE036678 N 0.732
Cucsa.113230 Cucumis sativus Cucsa.113230 N 0.718
SB08G015580 Sorghum bicolor Sb08g015580 N 0.718
LOC_Os10g17454 Oryza sativa LOC_Os10g17454 N 0.704
GRMZM2G009448 Zea mays GRMZM2G009448 N 0.704
chr1.CM0410.300.nd Lotus japonicus chr1.CM0410.300.nd N 0.704