B9I2R7_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0012s05870 T45628_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s05870.1 RRM 42 112

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A9PIG6_POPTR Populus trichocarpa POPTR_0015s06810 N 0.930
cassava43399.valid.m1 Manihot esculenta cassava43399.valid.m1 N 0.887
Cucsa.198260 Cucumis sativus Cucsa.198260 N 0.873
30138.m003973 Ricinus communis 30138.m003973 N 0.859
MDP0000635271 Malus x domestica MDP0000635271 N 0.859
cassava29351.valid.m1 Manihot esculenta cassava29351.valid.m1 N 0.845
cassava29352.valid.m1 Manihot esculenta cassava29352.valid.m1 N 0.845
PK15111.1 Cannabis sativa PK15111.1 N 0.831
GSVIVG00007865001 Vitis vinifera GSVIVG00007865001 N 0.831
ppa010113m Prunus persica ppa010113m N 0.817
Glyma17g08630.1 Glycine max Glyma17g08630.1 N 0.803
Glyma05g00400.1 Glycine max Glyma05g00400.1 N 0.803
MDP0000255642 Malus x domestica MDP0000255642 N 0.789
MDP0000302917 Malus x domestica MDP0000302917 N 0.789
mgf016144m Mimulus guttatus mgf016144m N 0.775
mgf014059m Mimulus guttatus mgf014059m N 0.775
mgf012875m Mimulus guttatus mgf012875m N 0.775
mgf007732m Mimulus guttatus mgf007732m N 0.775
Cucsa.113230 Cucumis sativus Cucsa.113230 N 0.761
PDK_20s1328241g004 Phoenix dactylifera PDK_20s1328241g004 N 0.761
Medtr3g036670 Medicago truncatula Medtr3g036670 N 0.761
GRMZM2G150521 Zea mays GRMZM2G150521 N 0.761
XM_002887486.1 Arabidopsis lyrata fgenesh2_kg.2__1690__AT1G74230.1 N 0.732
XM_002864670.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002097 N 0.732
GR-RBP5 Arabidopsis thaliana AT1G74230-TAIR-G N 0.732
chr1.CM0410.300.nd Lotus japonicus chr1.CM0410.300.nd N 0.732
SB08G015580 Sorghum bicolor Sb08g015580 N 0.718
LjT12A09.50.nd Lotus japonicus LjT12A09.50.nd N 0.718
GR-RBP3 Arabidopsis thaliana AT5G61030-TAIR-G N 0.718
Glyma18g50150.1 Glycine max Glyma18g50150.1 N 0.718
LOC_Os10g17454 Oryza sativa LOC_Os10g17454 N 0.704
Glyma08g26900.1 Glycine max Glyma08g26900.1 N 0.704