MDP0000162476 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000162476 T57371_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000162476 RRM 19 83

Links

Other RRM family RBPs
Other Malus x domestica RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29581.m000256 Ricinus communis 29581.m000256 N 0.789
ATSC35 Arabidopsis thaliana AT5G64200-TAIR-G N 0.803
BGIOSIBCE025656 Oryza indica BGIOSIBCE025656 N 0.718
BGIOSIBCE028287 Oryza indica BGIOSIBCE028287 N 0.732
BRADI1G21390 Brachypodium distachyon BRADI1G21390 N 0.746
BRADI3G38797 Brachypodium distachyon BRADI3G38797 N 0.746
cassava18324.valid.m1 Manihot esculenta cassava18324.valid.m1 N 0.775
chr4.CM0182.440.nc Lotus japonicus chr4.CM0182.440.nc N 0.746
Cucsa.217920 Cucumis sativus Cucsa.217920 N 0.761
Cucsa.393860 Cucumis sativus Cucsa.393860 N 0.789
estExt_fgenesh1_pg.C_3970019 Physcomitrella patens estExt_fgenesh1_pg.C_3970019 N 0.718
e_gw1.42.218.1 Physcomitrella patens e_gw1.42.218.1 N 0.718
XM_002866555.1 Arabidopsis lyrata fgenesh2_kg.8__2435__AT5G64200.1 N 0.803
Glyma05g24540.1 Glycine max Glyma05g24540.1 N 0.761
Glyma08g07730.1 Glycine max Glyma08g07730.1 N 0.761
GRMZM2G016296 Zea mays GRMZM2G016296 N 0.732
GRMZM2G025281 Zea mays GRMZM2G025281 N 0.746
GRMZM2G077823 Zea mays GRMZM2G077823 N 0.732
GRMZM2G110143 Zea mays GRMZM2G110143 N 0.718
GSVIVG00009023001 Vitis vinifera GSVIVG00009023001 N 0.817
GSVIVG00038734001 Vitis vinifera GSVIVG00038734001 N 0.746
gw1.7.122.1 Selaginella moellendorfii gw1.7.122.1 N 0.732
LOC_Os07g43050 Oryza sativa LOC_Os07g43050 N 0.718
LOC_Os08g37960 Oryza sativa LOC_Os08g37960 N 0.732
MDP0000129321 Malus x domestica MDP0000129321 N 0.817
MDP0000729468 Malus x domestica MDP0000729468 N 0.871
Medtr5g078930 Medicago truncatula Medtr5g078930 N 0.761
mgf002522m Mimulus guttatus mgf002522m N 0.789
PK13173.1 Cannabis sativa PK13173.1 N 0.775
PK28446.1 Cannabis sativa PK28446.1 N 0.789
B9GUV2_POPTR Populus trichocarpa POPTR_0002s09630 N 0.775
B9GZT2_POPTR Populus trichocarpa POPTR_0003s01810 N 0.775
A9PCL7_POPTR Populus trichocarpa POPTR_0005s17020 N 0.761
ppa009468m Prunus persica ppa009468m N 0.817
ppa010124m Prunus persica ppa010124m N 0.761
Sb02g039740 Sorghum bicolor Sb02g039740 N 0.732
Sb07g029000 Sorghum bicolor Sb07g029000 N 0.718
scaffold_37200001.1 Arabidopsis lyrata scaffold_37200001.1 N 0.864