Cucsa.217920 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.217920 T49592_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.217920.1 RRM 18 88
Cucsa.217920.2 RRM 18 88
Cucsa.217920.3 RRM 18 88

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29581.m000256 Ricinus communis 29581.m000256 N 0.944
Glyma05g24540.1 Glycine max Glyma05g24540.1 N 0.930
Glyma08g07730.1 Glycine max Glyma08g07730.1 N 0.930
cassava18324.valid.m1 Manihot esculenta cassava18324.valid.m1 N 0.930
B9GZT2_POPTR Populus trichocarpa POPTR_0003s01810 N 0.930
ATSC35 Arabidopsis thaliana AT5G64200-TAIR-G N 0.915
ppa010124m Prunus persica ppa010124m N 0.915
XM_002866555.1 Arabidopsis lyrata fgenesh2_kg.8__2435__AT5G64200.1 N 0.915
Medtr5g078930 Medicago truncatula Medtr5g078930 N 0.915
chr4.CM0182.440.nc Lotus japonicus chr4.CM0182.440.nc N 0.901
GSVIVG00009023001 Vitis vinifera GSVIVG00009023001 N 0.901
GSVIVG00038734001 Vitis vinifera GSVIVG00038734001 N 0.901
PK13173.1 Cannabis sativa PK13173.1 N 0.901
B9GUV2_POPTR Populus trichocarpa POPTR_0002s09630 N 0.887
MDP0000129321 Malus x domestica MDP0000129321 N 0.887
Cucsa.393860 Cucumis sativus Cucsa.393860 N 0.887
LOC_Os07g43050 Oryza sativa LOC_Os07g43050 N 0.873
estExt_fgenesh1_pg.C_3970019 Physcomitrella patens estExt_fgenesh1_pg.C_3970019 N 0.873
A9PCL7_POPTR Populus trichocarpa POPTR_0005s17020 N 0.873
BGIOSIBCE025656 Oryza indica BGIOSIBCE025656 N 0.873
e_gw1.42.218.1 Physcomitrella patens e_gw1.42.218.1 N 0.873
BRADI3G38797 Brachypodium distachyon BRADI3G38797 N 0.873
GRMZM2G025281 Zea mays GRMZM2G025281 N 0.873
ppa009468m Prunus persica ppa009468m N 0.873
PK28446.1 Cannabis sativa PK28446.1 N 0.873
Sb07g029000 Sorghum bicolor Sb07g029000 N 0.859
gw1.7.122.1 Selaginella moellendorfii gw1.7.122.1 N 0.859
Sb02g039740 Sorghum bicolor Sb02g039740 N 0.859
GRMZM2G077823 Zea mays GRMZM2G077823 N 0.859
mgf002522m Mimulus guttatus mgf002522m N 0.859
BRADI1G21390 Brachypodium distachyon BRADI1G21390 N 0.859
GRMZM2G016296 Zea mays GRMZM2G016296 N 0.845
BGIOSIBCE028287 Oryza indica BGIOSIBCE028287 N 0.831
MDP0000729468 Malus x domestica MDP0000729468 N 0.831
LOC_Os08g37960 Oryza sativa LOC_Os08g37960 N 0.831
GRMZM2G110143 Zea mays GRMZM2G110143 N 0.831
scaffold_37200001.1 Arabidopsis lyrata scaffold_37200001.1 N 0.817
e_gw1.124.43.1 Selaginella moellendorfii e_gw1.124.43.1 N 0.817
MDP0000162476 Malus x domestica MDP0000162476 N 0.761
BGIOSIBCE011379 Oryza indica BGIOSIBCE011379 N 0.761
LOC_Os03g27030 Oryza sativa LOC_Os03g27030 N 0.761
GRMZM2G104353 Zea mays GRMZM2G104353 N 0.704
SB01G033710 Sorghum bicolor Sb01g033710 N 0.704