cassava18324.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava18324.valid.m1 T49154_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava18324.valid.m1 RRM 18 88

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29581.m000256 Ricinus communis 29581.m000256 N 0.986
PK13173.1 Cannabis sativa PK13173.1 N 0.972
B9GZT2_POPTR Populus trichocarpa POPTR_0003s01810 N 0.972
Medtr5g078930 Medicago truncatula Medtr5g078930 N 0.958
GSVIVG00038734001 Vitis vinifera GSVIVG00038734001 N 0.958
B9GUV2_POPTR Populus trichocarpa POPTR_0002s09630 N 0.958
chr4.CM0182.440.nc Lotus japonicus chr4.CM0182.440.nc N 0.944
A9PCL7_POPTR Populus trichocarpa POPTR_0005s17020 N 0.944
ppa010124m Prunus persica ppa010124m N 0.944
Glyma08g07730.1 Glycine max Glyma08g07730.1 N 0.944
Glyma05g24540.1 Glycine max Glyma05g24540.1 N 0.944
Cucsa.217920 Cucumis sativus Cucsa.217920 N 0.930
GSVIVG00009023001 Vitis vinifera GSVIVG00009023001 N 0.930
MDP0000129321 Malus x domestica MDP0000129321 N 0.930
ATSC35 Arabidopsis thaliana AT5G64200-TAIR-G N 0.915
PK28446.1 Cannabis sativa PK28446.1 N 0.915
XM_002866555.1 Arabidopsis lyrata fgenesh2_kg.8__2435__AT5G64200.1 N 0.915
Sb02g039740 Sorghum bicolor Sb02g039740 N 0.915
LOC_Os07g43050 Oryza sativa LOC_Os07g43050 N 0.915
BRADI1G21390 Brachypodium distachyon BRADI1G21390 N 0.915
BGIOSIBCE025656 Oryza indica BGIOSIBCE025656 N 0.915
ppa009468m Prunus persica ppa009468m N 0.915
GRMZM2G077823 Zea mays GRMZM2G077823 N 0.915
GRMZM2G025281 Zea mays GRMZM2G025281 N 0.901
BRADI3G38797 Brachypodium distachyon BRADI3G38797 N 0.901
mgf002522m Mimulus guttatus mgf002522m N 0.901
Cucsa.393860 Cucumis sativus Cucsa.393860 N 0.901
LOC_Os08g37960 Oryza sativa LOC_Os08g37960 N 0.887
BGIOSIBCE028287 Oryza indica BGIOSIBCE028287 N 0.887
GRMZM2G016296 Zea mays GRMZM2G016296 N 0.887
estExt_fgenesh1_pg.C_3970019 Physcomitrella patens estExt_fgenesh1_pg.C_3970019 N 0.873
GRMZM2G110143 Zea mays GRMZM2G110143 N 0.873
e_gw1.42.218.1 Physcomitrella patens e_gw1.42.218.1 N 0.873
Sb07g029000 Sorghum bicolor Sb07g029000 N 0.873
gw1.7.122.1 Selaginella moellendorfii gw1.7.122.1 N 0.873
MDP0000729468 Malus x domestica MDP0000729468 N 0.859
e_gw1.124.43.1 Selaginella moellendorfii e_gw1.124.43.1 N 0.831
LOC_Os03g27030 Oryza sativa LOC_Os03g27030 N 0.803
BGIOSIBCE011379 Oryza indica BGIOSIBCE011379 N 0.803
scaffold_37200001.1 Arabidopsis lyrata scaffold_37200001.1 N 0.789
MDP0000162476 Malus x domestica MDP0000162476 N 0.775
GRMZM2G104353 Zea mays GRMZM2G104353 N 0.746
SB01G033710 Sorghum bicolor Sb01g033710 N 0.746
MDP0000161688 Malus x domestica MDP0000161688 N 0.718