LOC_Os08g37960 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os08g37960 T45113_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os08g37960.1 RRM 18 88
LOC_Os08g37960.2 RRM 18 88
LOC_Os08g37960.3 RRM 18 88

Links

Other RRM family RBPs
Other Oryza sativa RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE028287 Oryza indica BGIOSIBCE028287 N 1.000
GRMZM2G016296 Zea mays GRMZM2G016296 N 0.958
Sb07g029000 Sorghum bicolor Sb07g029000 N 0.958
BRADI3G38797 Brachypodium distachyon BRADI3G38797 N 0.958
GRMZM2G110143 Zea mays GRMZM2G110143 N 0.958
A9PCL7_POPTR Populus trichocarpa POPTR_0005s17020 N 0.915
B9GUV2_POPTR Populus trichocarpa POPTR_0002s09630 N 0.901
GSVIVG00009023001 Vitis vinifera GSVIVG00009023001 N 0.901
Cucsa.393860 Cucumis sativus Cucsa.393860 N 0.887
PK28446.1 Cannabis sativa PK28446.1 N 0.887
gw1.7.122.1 Selaginella moellendorfii gw1.7.122.1 N 0.887
cassava18324.valid.m1 Manihot esculenta cassava18324.valid.m1 N 0.887
MDP0000129321 Malus x domestica MDP0000129321 N 0.873
mgf002522m Mimulus guttatus mgf002522m N 0.873
e_gw1.42.218.1 Physcomitrella patens e_gw1.42.218.1 N 0.873
29581.m000256 Ricinus communis 29581.m000256 N 0.873
GSVIVG00038734001 Vitis vinifera GSVIVG00038734001 N 0.859
Medtr5g078930 Medicago truncatula Medtr5g078930 N 0.859
PK13173.1 Cannabis sativa PK13173.1 N 0.859
ppa009468m Prunus persica ppa009468m N 0.859
estExt_fgenesh1_pg.C_3970019 Physcomitrella patens estExt_fgenesh1_pg.C_3970019 N 0.859
B9GZT2_POPTR Populus trichocarpa POPTR_0003s01810 N 0.859
chr4.CM0182.440.nc Lotus japonicus chr4.CM0182.440.nc N 0.845
BRADI1G21390 Brachypodium distachyon BRADI1G21390 N 0.845
GRMZM2G077823 Zea mays GRMZM2G077823 N 0.845
Sb02g039740 Sorghum bicolor Sb02g039740 N 0.845
Glyma05g24540.1 Glycine max Glyma05g24540.1 N 0.845
Glyma08g07730.1 Glycine max Glyma08g07730.1 N 0.845
LOC_Os07g43050 Oryza sativa LOC_Os07g43050 N 0.831
BGIOSIBCE025656 Oryza indica BGIOSIBCE025656 N 0.831
Cucsa.217920 Cucumis sativus Cucsa.217920 N 0.831
GRMZM2G025281 Zea mays GRMZM2G025281 N 0.831
ATSC35 Arabidopsis thaliana AT5G64200-TAIR-G N 0.831
ppa010124m Prunus persica ppa010124m N 0.831
XM_002866555.1 Arabidopsis lyrata fgenesh2_kg.8__2435__AT5G64200.1 N 0.831
e_gw1.124.43.1 Selaginella moellendorfii e_gw1.124.43.1 N 0.817
LOC_Os03g27030 Oryza sativa LOC_Os03g27030 N 0.803
BGIOSIBCE011379 Oryza indica BGIOSIBCE011379 N 0.803
MDP0000729468 Malus x domestica MDP0000729468 N 0.803
SB01G033710 Sorghum bicolor Sb01g033710 N 0.775
GRMZM2G104353 Zea mays GRMZM2G104353 N 0.775
scaffold_37200001.1 Arabidopsis lyrata scaffold_37200001.1 N 0.746
MDP0000162476 Malus x domestica MDP0000162476 N 0.732