Cucsa.393860 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.393860 T49665_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.393860.1 RRM 18 88

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00009023001 Vitis vinifera GSVIVG00009023001 N 0.930
B9GUV2_POPTR Populus trichocarpa POPTR_0002s09630 N 0.915
MDP0000129321 Malus x domestica MDP0000129321 N 0.915
BRADI3G38797 Brachypodium distachyon BRADI3G38797 N 0.901
ppa009468m Prunus persica ppa009468m N 0.901
A9PCL7_POPTR Populus trichocarpa POPTR_0005s17020 N 0.901
cassava18324.valid.m1 Manihot esculenta cassava18324.valid.m1 N 0.901
Sb07g029000 Sorghum bicolor Sb07g029000 N 0.901
PK28446.1 Cannabis sativa PK28446.1 N 0.901
LOC_Os08g37960 Oryza sativa LOC_Os08g37960 N 0.887
BGIOSIBCE028287 Oryza indica BGIOSIBCE028287 N 0.887
mgf002522m Mimulus guttatus mgf002522m N 0.887
29581.m000256 Ricinus communis 29581.m000256 N 0.887
GRMZM2G016296 Zea mays GRMZM2G016296 N 0.887
Medtr5g078930 Medicago truncatula Medtr5g078930 N 0.887
Cucsa.217920 Cucumis sativus Cucsa.217920 N 0.887
Glyma08g07730.1 Glycine max Glyma08g07730.1 N 0.873
XM_002866555.1 Arabidopsis lyrata fgenesh2_kg.8__2435__AT5G64200.1 N 0.873
GRMZM2G110143 Zea mays GRMZM2G110143 N 0.873
ATSC35 Arabidopsis thaliana AT5G64200-TAIR-G N 0.873
B9GZT2_POPTR Populus trichocarpa POPTR_0003s01810 N 0.873
chr4.CM0182.440.nc Lotus japonicus chr4.CM0182.440.nc N 0.873
Glyma05g24540.1 Glycine max Glyma05g24540.1 N 0.873
GSVIVG00038734001 Vitis vinifera GSVIVG00038734001 N 0.873
PK13173.1 Cannabis sativa PK13173.1 N 0.873
estExt_fgenesh1_pg.C_3970019 Physcomitrella patens estExt_fgenesh1_pg.C_3970019 N 0.859
LOC_Os07g43050 Oryza sativa LOC_Os07g43050 N 0.859
Sb02g039740 Sorghum bicolor Sb02g039740 N 0.859
e_gw1.42.218.1 Physcomitrella patens e_gw1.42.218.1 N 0.859
BRADI1G21390 Brachypodium distachyon BRADI1G21390 N 0.859
BGIOSIBCE025656 Oryza indica BGIOSIBCE025656 N 0.859
GRMZM2G077823 Zea mays GRMZM2G077823 N 0.859
GRMZM2G025281 Zea mays GRMZM2G025281 N 0.845
MDP0000729468 Malus x domestica MDP0000729468 N 0.845
ppa010124m Prunus persica ppa010124m N 0.845
e_gw1.124.43.1 Selaginella moellendorfii e_gw1.124.43.1 N 0.831
gw1.7.122.1 Selaginella moellendorfii gw1.7.122.1 N 0.831
scaffold_37200001.1 Arabidopsis lyrata scaffold_37200001.1 N 0.789
LOC_Os03g27030 Oryza sativa LOC_Os03g27030 N 0.789
MDP0000162476 Malus x domestica MDP0000162476 N 0.789
BGIOSIBCE011379 Oryza indica BGIOSIBCE011379 N 0.789
SB01G033710 Sorghum bicolor Sb01g033710 N 0.746
GRMZM2G104353 Zea mays GRMZM2G104353 N 0.746
MDP0000161688 Malus x domestica MDP0000161688 N 0.704