ppa001307m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa001307m T58321_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa001307m RRM 196 261
ppa001307m RRM 281 346
ppa001307m RRM 698 769

Links

Other RRM family RBPs
Other Prunus persica RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28350.m000106 Ricinus communis 28350.m000106 N 0.931
29693.m002077 Ricinus communis 29693.m002077 N 0.941
30147.m014409 Ricinus communis 30147.m014409 N 0.873
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.873
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.877
ML2 Arabidopsis thaliana AT2G42890-TAIR-G N 0.740
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.789
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.814
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.868
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.887
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.804
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.833
BRADI5G08580 Brachypodium distachyon BRADI5G08580 N 0.730
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.824
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.779
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.779
cassava37261.valid.m1 Manihot esculenta cassava37261.valid.m1 N 0.760
cassava37262.valid.m1 Manihot esculenta cassava37262.valid.m1 N 0.760
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.971
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.971
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.971
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.971
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.971
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.961
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.971
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.926
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.922
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.873
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.863
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.887
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.873
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.902
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.887
XM_002870025.1 Arabidopsis lyrata fgenesh2_kg.7__2489__AT4G18120.1 N 0.770
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.775
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.941
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.946
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.961
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.946
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.887
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.800
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.882
GRMZM2G451716 Zea mays GRMZM2G451716 N 0.701
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.868
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.887
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.946
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.789
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.814
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.868
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.956
Medtr3g151260 Medicago truncatula Medtr3g151260 N 0.735
mgf000415m Mimulus guttatus mgf000415m N 0.843
mgf005765m Mimulus guttatus mgf005765m N 0.917
mgf014747m Mimulus guttatus mgf014747m N 0.932
mgf015667m Mimulus guttatus mgf015667m N 0.843
mgf023970m Mimulus guttatus mgf023970m N 0.862
PK15886.1 Cannabis sativa PK15886.1 N 0.838
PK19379.1 Cannabis sativa PK19379.1 N 0.784
PK24656.1 Cannabis sativa PK24656.1 N 0.951
PK25465.1 Cannabis sativa PK25465.1 N 0.926
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.829
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.912
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.814
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.912
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.814
ppa000845m Prunus persica ppa000845m N 0.833
ppa000997m Prunus persica ppa000997m N 0.804
ppa001327m Prunus persica ppa001327m N 0.941
SB04G021130 Sorghum bicolor Sb04g021130 N 0.810
SB10G000350 Sorghum bicolor Sb10g000350 N 0.892