SOCG_04535 (Schizosaccharomyces octosporus)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		SOCG_04535 T00324_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
SOCG_04535T0 CCCH ZF 13 39
SOCG_04535T0 RRM 71 135
SOCG_04535T0 CCCH ZF 143 169

Links

Other CCCH ZF,RRM family RBPs
Other Schizosaccharomyces octosporus RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CHGG_01857 Chaetomium globosum CHGG_01857 N 0.744
VDBG_04657 Verticillium albo atrum VDBG_04657 N 0.705
NCU03261 Neurospora crassa NCU03261 N 0.736
SPAP8A3.06 Schizosaccharomyces pombe SPAP8A3.06 N 0.891
estExt_fgenesh3_kg.C_70195 Neurospora discreta estExt_fgenesh3_kg.C_70195 N 0.736
estExt_Genewise1.C_270092 Cochliobolus heterostrophus C5 estExt_Genewise1.C_270092 N 0.723
estExt_Genewise1.C_sca_3_chr4_2_00935 Nectria haematococca estExt_Genewise1.C_sca_3_chr4_2_00935 N 0.723
estExt_Genewise1Plus.C_31771 Mucor circinelloides estExt_Genewise1Plus.C_31771 N 0.723
estExt_Genewise1Plus.C_50321 Neurospora tetrasperma estExt_Genewise1Plus.C_50321 N 0.736
fgenesh1_pg.C_scaffold_49000019 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_49000019 N 0.723
EAT83092.1 Phaeosphaeria nodorum EAT83092.1 N 0.714
PredSwiss_ASS2010_1021.1 Pneumocystis carinii PredSwiss_ASS2010_1021.1 N 0.808
PredSwiss_CON3041.3 Pneumocystis carinii PredSwiss_CON3041.3 N 0.808
AB00394.1 Alternaria brassicicola AB00394.1 N 0.723
estExt_Genewise1Plus.C_51141 Cryphonectria parasitica estExt_Genewise1Plus.C_51141 N 0.715
Pa_1_2890 Podospora anserina Pa_1_2890 N 0.730
VDAG_04200 Verticillium dahliae VDAG_04200 N 0.705
TESG_04620 Trichophyton tonsurans TESG_04620 N 0.707
CIMG_04462 Coccidioides immitis CIMG_04462 N 0.715
CPSG_06303 Coccidioides posadasii CPSG_06303 N 0.707
FGSG_06860 Fusarium graminearum FGSG_06860 N 0.705
FOXG_01966 Fusarium oxysporum FOXG_01966 N 0.705
FVEG_05126 Fusarium verticillioides FVEG_05126 N 0.705
GLRG_01478 Colletotrichum graminicola GLRG_01478 N 0.721
MCYG_05692 Microsporum canis MCYG_05692 N 0.707
MGG_09948 Magnaporthe oryzae MGG_09948 N 0.715
MGYG_02786 Microsporum gypseum MGYG_02786 N 0.707
PTRG_10702 Pyrenophora tritici repentis PTRG_10702 N 0.723
RO3G_03843 Rhizopus oryzae RO3G_03843 N 0.714
SJAG_00225 Schizosaccharomyces japonicus SJAG_00225 N 0.916
SNOG_09827 Stagonospora nodorum SNOG_09827 N 0.714
SPOG_03722 Schizosaccharomyces cryophilus SPOG_03722 N 0.975
TERG_06877 Trichophyton rubrum TERG_06877 N 0.707
PMAA_016150 Penicillium marneffei PMAA_016150 N 0.748