VDAG_04200 (Verticillium dahliae)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		VDAG_04200 T00343_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
VDAG_04200T0 CCCH ZF 14 39
VDAG_04200T0 RRM 67 134
VDAG_04200T0 CCCH ZF 142 168

Links

Other CCCH ZF,RRM family RBPs
Other Verticillium dahliae RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
VDBG_04657 Verticillium albo atrum VDBG_04657 N 1.000
GLRG_01478 Colletotrichum graminicola GLRG_01478 N 0.983
FOXG_01966 Fusarium oxysporum FOXG_01966 N 0.975
FGSG_06860 Fusarium graminearum FGSG_06860 N 0.975
FVEG_05126 Fusarium verticillioides FVEG_05126 N 0.975
MGG_09948 Magnaporthe oryzae MGG_09948 N 0.951
estExt_fgenesh3_kg.C_70195 Neurospora discreta estExt_fgenesh3_kg.C_70195 N 0.951
NCU03261 Neurospora crassa NCU03261 N 0.951
estExt_Genewise1Plus.C_50321 Neurospora tetrasperma estExt_Genewise1Plus.C_50321 N 0.951
Pa_1_2890 Podospora anserina Pa_1_2890 N 0.951
CIMG_04462 Coccidioides immitis CIMG_04462 N 0.943
CHGG_01857 Chaetomium globosum CHGG_01857 N 0.943
estExt_Genewise1.C_sca_3_chr4_2_00935 Nectria haematococca estExt_Genewise1.C_sca_3_chr4_2_00935 N 0.942
CPSG_06303 Coccidioides posadasii CPSG_06303 N 0.935
estExt_Genewise1Plus.C_51141 Cryphonectria parasitica estExt_Genewise1Plus.C_51141 N 0.935
MCYG_05692 Microsporum canis MCYG_05692 N 0.927
An01g01060 Aspergillus niger CADANGAG00000104 N 0.927
ACLA_061920 Aspergillus clavatus CADACLAG00005985 N 0.927
MGYG_02786 Microsporum gypseum MGYG_02786 N 0.927
TESG_04620 Trichophyton tonsurans TESG_04620 N 0.927
TERG_06877 Trichophyton rubrum TERG_06877 N 0.927
ANIA_09362 Aspergillus nidulans CADANIAG00001149 N 0.927
ATEG_07467 Aspergillus terreus CADATEAG00003016 N 0.927
BDBG_04724 Blastomyces dermatitidis BDBG_04724 N 0.920
AO090120000034 Aspergillus oryzae CADAORAG00011213 N 0.919
fgenesh1_pg.00771_#_421 Aspergillus carbonarius fgenesh1_pg.00771_#_421 N 0.919
AFLA_090330 Aspergillus flavus CADAFLAG00008718 N 0.919
NFIA_003540 Neosartorya fischeri CADNFIAG00000551 N 0.919
AFUA_3G02380 Aspergillus fumigatus CADAFUAG00000282 N 0.919
PTRG_10702 Pyrenophora tritici repentis PTRG_10702 N 0.902
estExt_Genewise1.C_270092 Cochliobolus heterostrophus C5 estExt_Genewise1.C_270092 N 0.902
PMAA_016150 Penicillium marneffei PMAA_016150 N 0.902
AB00394.1 Alternaria brassicicola AB00394.1 N 0.902
EAT83092.1 Phaeosphaeria nodorum EAT83092.1 N 0.893
SNOG_09827 Stagonospora nodorum SNOG_09827 N 0.893
fgenesh1_pg.C_scaffold_49000019 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_49000019 N 0.885
BC1G_10530 Botrytis cinerea BC1G_10530 N 0.868
SS1G_04229 Sclerotinia sclerotiorum SS1G_04229 N 0.868
estExt_Genewise1.C_chr_10003 Mycosphaerella graminicola estExt_Genewise1.C_chr_10003 N 0.844
GSTUMT00005341001 Tuber melanosporum GSTUMT00005341001 N 0.828
PredSwiss_CON3041.3 Pneumocystis carinii PredSwiss_CON3041.3 N 0.748
PredSwiss_ASS2010_1021.1 Pneumocystis carinii PredSwiss_ASS2010_1021.1 N 0.748
SPAP8A3.06 Schizosaccharomyces pombe SPAP8A3.06 N 0.705
SOCG_04535 Schizosaccharomyces octosporus SOCG_04535 N 0.705