fgenesh1_pg.C_scaffold_49000019 (Mycosphaerella fijiensis)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		fgenesh1_pg.C_scaffold_49000019 T00935_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_49000019 CCCH ZF 13 39
fgenesh1_pg.C_scaffold_49000019 RRM 72 134
fgenesh1_pg.C_scaffold_49000019 CCCH ZF 142 168

Links

Other CCCH ZF,RRM family RBPs
Other Mycosphaerella fijiensis RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BC1G_10530 Botrytis cinerea BC1G_10530 N 0.949
SS1G_04229 Sclerotinia sclerotiorum SS1G_04229 N 0.949
PMAA_016150 Penicillium marneffei PMAA_016150 N 0.941
TESG_04620 Trichophyton tonsurans TESG_04620 N 0.927
CIMG_04462 Coccidioides immitis CIMG_04462 N 0.927
MCYG_05692 Microsporum canis MCYG_05692 N 0.927
TERG_06877 Trichophyton rubrum TERG_06877 N 0.927
MGYG_02786 Microsporum gypseum MGYG_02786 N 0.927
estExt_Genewise1.C_sca_3_chr4_2_00935 Nectria haematococca estExt_Genewise1.C_sca_3_chr4_2_00935 N 0.924
estExt_Genewise1.C_chr_10003 Mycosphaerella graminicola estExt_Genewise1.C_chr_10003 N 0.923
CPSG_06303 Coccidioides posadasii CPSG_06303 N 0.919
Pa_1_2890 Podospora anserina Pa_1_2890 N 0.918
NCU03261 Neurospora crassa NCU03261 N 0.917
estExt_fgenesh3_kg.C_70195 Neurospora discreta estExt_fgenesh3_kg.C_70195 N 0.917
estExt_Genewise1Plus.C_50321 Neurospora tetrasperma estExt_Genewise1Plus.C_50321 N 0.917
CHGG_01857 Chaetomium globosum CHGG_01857 N 0.917
GSTUMT00005341001 Tuber melanosporum GSTUMT00005341001 N 0.915
AFLA_090330 Aspergillus flavus CADAFLAG00008718 N 0.911
AO090120000034 Aspergillus oryzae CADAORAG00011213 N 0.911
estExt_Genewise1Plus.C_51141 Cryphonectria parasitica estExt_Genewise1Plus.C_51141 N 0.911
BDBG_04724 Blastomyces dermatitidis BDBG_04724 N 0.904
ANIA_09362 Aspergillus nidulans CADANIAG00001149 N 0.902
An01g01060 Aspergillus niger CADANGAG00000104 N 0.902
ATEG_07467 Aspergillus terreus CADATEAG00003016 N 0.902
ACLA_061920 Aspergillus clavatus CADACLAG00005985 N 0.902
estExt_Genewise1.C_270092 Cochliobolus heterostrophus C5 estExt_Genewise1.C_270092 N 0.899
PTRG_10702 Pyrenophora tritici repentis PTRG_10702 N 0.899
AB00394.1 Alternaria brassicicola AB00394.1 N 0.899
AFUA_3G02380 Aspergillus fumigatus CADAFUAG00000282 N 0.895
fgenesh1_pg.00771_#_421 Aspergillus carbonarius fgenesh1_pg.00771_#_421 N 0.895
NFIA_003540 Neosartorya fischeri CADNFIAG00000551 N 0.895
FVEG_05126 Fusarium verticillioides FVEG_05126 N 0.893
FOXG_01966 Fusarium oxysporum FOXG_01966 N 0.893
FGSG_06860 Fusarium graminearum FGSG_06860 N 0.893
EAT83092.1 Phaeosphaeria nodorum EAT83092.1 N 0.891
SNOG_09827 Stagonospora nodorum SNOG_09827 N 0.891
VDBG_04657 Verticillium albo atrum VDBG_04657 N 0.885
VDAG_04200 Verticillium dahliae VDAG_04200 N 0.885
GLRG_01478 Colletotrichum graminicola GLRG_01478 N 0.885
MGG_09948 Magnaporthe oryzae MGG_09948 N 0.878
PredSwiss_ASS2010_1021.1 Pneumocystis carinii PredSwiss_ASS2010_1021.1 N 0.788
PredSwiss_CON3041.3 Pneumocystis carinii PredSwiss_CON3041.3 N 0.788
SJAG_00225 Schizosaccharomyces japonicus SJAG_00225 N 0.746
SPAP8A3.06 Schizosaccharomyces pombe SPAP8A3.06 N 0.746
SOCG_04535 Schizosaccharomyces octosporus SOCG_04535 N 0.723
SPOG_03722 Schizosaccharomyces cryophilus SPOG_03722 N 0.708