AB00394.1 (Alternaria brassicicola)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		AB00394.1 T01042_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AB00394.1 CCCH ZF 13 39
AB00394.1 RRM 70 134
AB00394.1 CCCH ZF 142 168

Links

Other CCCH ZF,RRM family RBPs
Other Alternaria brassicicola RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1.C_270092 Cochliobolus heterostrophus C5 estExt_Genewise1.C_270092 N 1.000
PTRG_10702 Pyrenophora tritici repentis PTRG_10702 N 1.000
SNOG_09827 Stagonospora nodorum SNOG_09827 N 0.992
EAT83092.1 Phaeosphaeria nodorum EAT83092.1 N 0.992
estExt_Genewise1.C_sca_3_chr4_2_00935 Nectria haematococca estExt_Genewise1.C_sca_3_chr4_2_00935 N 0.916
CHGG_01857 Chaetomium globosum CHGG_01857 N 0.909
VDBG_04657 Verticillium albo atrum VDBG_04657 N 0.902
VDAG_04200 Verticillium dahliae VDAG_04200 N 0.902
estExt_fgenesh3_kg.C_70195 Neurospora discreta estExt_fgenesh3_kg.C_70195 N 0.901
estExt_Genewise1Plus.C_50321 Neurospora tetrasperma estExt_Genewise1Plus.C_50321 N 0.901
NCU03261 Neurospora crassa NCU03261 N 0.901
fgenesh1_pg.C_scaffold_49000019 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_49000019 N 0.899
PMAA_016150 Penicillium marneffei PMAA_016150 N 0.899
AFLA_090330 Aspergillus flavus CADAFLAG00008718 N 0.895
AO090120000034 Aspergillus oryzae CADAORAG00011213 N 0.895
An01g01060 Aspergillus niger CADANGAG00000104 N 0.894
ACLA_061920 Aspergillus clavatus CADACLAG00005985 N 0.894
ANIA_09362 Aspergillus nidulans CADANIAG00001149 N 0.894
ATEG_07467 Aspergillus terreus CADATEAG00003016 N 0.894
Pa_1_2890 Podospora anserina Pa_1_2890 N 0.893
FVEG_05126 Fusarium verticillioides FVEG_05126 N 0.893
FGSG_06860 Fusarium graminearum FGSG_06860 N 0.893
FOXG_01966 Fusarium oxysporum FOXG_01966 N 0.893
fgenesh1_pg.00771_#_421 Aspergillus carbonarius fgenesh1_pg.00771_#_421 N 0.887
NFIA_003540 Neosartorya fischeri CADNFIAG00000551 N 0.887
AFUA_3G02380 Aspergillus fumigatus CADAFUAG00000282 N 0.887
estExt_Genewise1Plus.C_51141 Cryphonectria parasitica estExt_Genewise1Plus.C_51141 N 0.886
GLRG_01478 Colletotrichum graminicola GLRG_01478 N 0.885
CIMG_04462 Coccidioides immitis CIMG_04462 N 0.878
TERG_06877 Trichophyton rubrum TERG_06877 N 0.870
MGG_09948 Magnaporthe oryzae MGG_09948 N 0.870
MCYG_05692 Microsporum canis MCYG_05692 N 0.870
MGYG_02786 Microsporum gypseum MGYG_02786 N 0.870
CPSG_06303 Coccidioides posadasii CPSG_06303 N 0.870
TESG_04620 Trichophyton tonsurans TESG_04620 N 0.870
GSTUMT00005341001 Tuber melanosporum GSTUMT00005341001 N 0.866
BDBG_04724 Blastomyces dermatitidis BDBG_04724 N 0.856
SS1G_04229 Sclerotinia sclerotiorum SS1G_04229 N 0.849
BC1G_10530 Botrytis cinerea BC1G_10530 N 0.849
estExt_Genewise1.C_chr_10003 Mycosphaerella graminicola estExt_Genewise1.C_chr_10003 N 0.840
PredSwiss_CON3041.3 Pneumocystis carinii PredSwiss_CON3041.3 N 0.750
PredSwiss_ASS2010_1021.1 Pneumocystis carinii PredSwiss_ASS2010_1021.1 N 0.750
SPAP8A3.06 Schizosaccharomyces pombe SPAP8A3.06 N 0.748
SJAG_00225 Schizosaccharomyces japonicus SJAG_00225 N 0.739
SOCG_04535 Schizosaccharomyces octosporus SOCG_04535 N 0.723
SPOG_03722 Schizosaccharomyces cryophilus SPOG_03722 N 0.708
SPPG_02695 Spizellomyces punctatus SPPG_02695 N 0.700