cassava7063.valid.m1 (Manihot esculenta)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		cassava7063.valid.m1 T00850_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava7063.valid.m1 CCCH ZF 63 86
cassava7063.valid.m1 RRM 223 283

Links

Other CCCH ZF,RRM family RBPs
Other Manihot esculenta RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK01281.1 Cannabis sativa PK01281.1 N 0.847
Glyma08g43790.1 Glycine max Glyma08g43790.1 N 0.759
Glyma14g01930.1 Glycine max Glyma14g01930.1 N 0.759
Glyma18g09020.1 Glycine max Glyma18g09020.1 N 0.724
mgf000973m Mimulus guttatus mgf000973m N 0.706
mgf003557m Mimulus guttatus mgf003557m N 0.759
Medtr3g077080 Medicago truncatula Medtr3g077080 N 0.744
Medtr5g102170 Medicago truncatula Medtr5g102170 N 0.753
MDP0000214614 Malus x domestica MDP0000214614 N 0.824
MDP0000906147 Malus x domestica MDP0000906147 N 0.816
ppa003564m Prunus persica ppa003564m N 0.824
Glyma02g46760.1 Glycine max Glyma02g46760.1 N 0.706
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.805
PK20504.1 Cannabis sativa PK20504.1 N 0.859
AT2G05160 Arabidopsis thaliana AT2G05160-TAIR-G N 0.793
XM_002876131.1 Arabidopsis lyrata fgenesh2_kg.5__1664__AT3G52980.1 N 0.747
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.805
B9GTF9_POPTR Populus trichocarpa POPTR_0002s22240 N 0.759
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.816
27613.m000645 Ricinus communis 27613.m000645 N 0.884
29223.m000023 Ricinus communis 29223.m000023 N 0.776
cassava31399.valid.m1 Manihot esculenta cassava31399.valid.m1 N 0.966
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 0.966
ppa019338m Prunus persica ppa019338m N 0.862