CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Zc3h7a
(
Dipodomys ordii
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSDORG00000013662
T02512_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000012845
CCCH ZF
505
524
ICKDVAAEEECRYSGHCTFA
ENSDORP00000012845
CCCH ZF
771
796
QFDLCNHIASGKKCQYVGNCSFAHSL
ENSDORP00000012845
CCCH ZF
903
927
YFSICERYMTGTCPDGSGCKFAHGN
Links
Other
CCCH ZF
family RBPs
Other
Dipodomys ordii
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTTG_06000
Puccinia triticina
PTTG_06000
N
0.000
ENSGACG00000013464
Gasterosteus aculeatus
ENSGACG00000013464
N
0.000
ENSGACG00000001944
Gasterosteus aculeatus
ENSGACG00000001944
N
0.000
CRE07474
Caenorhabditis remanei
CRE07474
N
0.000
CRE02565
Caenorhabditis remanei
CRE02565
N
0.000
PTTG_10344
Puccinia triticina
PTTG_10344
N
0.000
PTTG_10291
Puccinia triticina
PTTG_10291
N
0.000
PTTG_09070
Puccinia triticina
PTTG_09070
N
0.000
PTTG_08665
Puccinia triticina
PTTG_08665
N
0.000
PTTG_08342
Puccinia triticina
PTTG_08342
N
0.000
PTTG_06752
Puccinia triticina
PTTG_06752
N
0.000
PTTG_06629
Puccinia triticina
PTTG_06629
N
0.000
ENSGACG00000020110
Gasterosteus aculeatus
ENSGACG00000020110
N
0.000