Aqu1.225680 (Amphimedon queenslandica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Aqu1.225680 T04732_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Aqu1.225680 CCCH ZF 88 110
Aqu1.225680 CCCH ZF 136 152
Aqu1.225680 CCCH ZF 283 309

Links

Other CCCH ZF family RBPs
Other Amphimedon queenslandica RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s17350g1t1 Acyrtosiphon pisum DGIL_AUG5s17350g1t1 N 0.735
XP_001180099.1 Strongylocentrotus purpuratus XP_001180099.1 N 0.779
Smp_154250 Schistosoma mansoni Smp_154250 N 0.714
Sjc_0008870 Schistosoma japonicum Sjc_0008870 N 0.714
fgenesh2_pg.scaffold_5000153 Branchiostoma floridae fgenesh2_pg.scaffold_5000153 N 0.725
e_gw.10.245.1 Nematostella vectensis e_gw.10.245.1 N 0.768
GK12832 Drosophila willistoni FBgn0214841 N 0.706
UNKL Takifugu rubripes ENSTRUG00000012086 N 0.739
XR_022366.1 Pan troglodytes ENSPTRG00000007591 N 0.743
UNK Microcebus murinus ENSMICG00000007591 N 0.721
UNK Erinaceus europaeus ENSEEUG00000013779 N 0.716
ENSCSAVG00000004843 Ciona savignyi ENSCSAVG00000004843 N 0.721
nasonia_NCBI_hmm1068274 Nasonia vitripennis nasonia_NCBI_hmm1068274 N 0.765
XP_789013.2 Strongylocentrotus purpuratus XP_789013.2 N 0.779