fgenesh2_pg.scaffold_5000153 (Branchiostoma floridae)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh2_pg.scaffold_5000153 T05315_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_5000153 CCCH ZF 79 101
fgenesh2_pg.scaffold_5000153 CCCH ZF 125 142
fgenesh2_pg.scaffold_5000153 CCCH ZF 278 304

Links

Other CCCH ZF family RBPs
Other Branchiostoma floridae RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw.10.245.1 Nematostella vectensis e_gw.10.245.1 N 0.868
UNKL Takifugu rubripes ENSTRUG00000012086 N 0.797
XR_022366.1 Pan troglodytes ENSPTRG00000007591 N 0.786
XP_789013.2 Strongylocentrotus purpuratus XP_789013.2 N 0.783
XP_001180099.1 Strongylocentrotus purpuratus XP_001180099.1 N 0.783
GK12832 Drosophila willistoni FBgn0214841 N 0.779
nasonia_NCBI_hmm1068274 Nasonia vitripennis nasonia_NCBI_hmm1068274 N 0.765
XP_002155288.1 Hydra magnipapillata XP_002155288.1 N 0.761
ENSCSAVG00000004843 Ciona savignyi ENSCSAVG00000004843 N 0.757
UNK Erinaceus europaeus ENSEEUG00000013779 N 0.750
UNK Microcebus murinus ENSMICG00000007591 N 0.743
Aqu1.225680 Amphimedon queenslandica Aqu1.225680 N 0.725
DGIL_AUG5s17350g1t1 Acyrtosiphon pisum DGIL_AUG5s17350g1t1 N 0.721
UNK Otolemur garnettii ENSOGAG00000001922 N 0.721
UNK Oryzias latipes ENSORLG00000018637 N 0.714
Smp_154250 Schistosoma mansoni Smp_154250 N 0.700
Sjc_0008870 Schistosoma japonicum Sjc_0008870 N 0.700