ENSCSAVG00000004843 (Ciona savignyi)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSCSAVG00000004843 T02424_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000008138 CCCH ZF 69 92
ENSCSAVP00000008138 CCCH ZF 119 134
ENSCSAVP00000008138 CCCH ZF 267 293
ENSCSAVP00000008139 CCCH ZF 62 85
ENSCSAVP00000008139 CCCH ZF 112 127
ENSCSAVP00000008139 CCCH ZF 260 286
ENSCSAVP00000008140 CCCH ZF 74 98
ENSCSAVP00000008140 CCCH ZF 138 149
ENSCSAVP00000008140 CCCH ZF 153 168

Links

Other CCCH ZF family RBPs
Other Ciona savignyi RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw.10.245.1 Nematostella vectensis e_gw.10.245.1 N 0.771
XP_001180099.1 Strongylocentrotus purpuratus XP_001180099.1 N 0.768
XP_789013.2 Strongylocentrotus purpuratus XP_789013.2 N 0.768
fgenesh2_pg.scaffold_5000153 Branchiostoma floridae fgenesh2_pg.scaffold_5000153 N 0.757
UNKL Takifugu rubripes ENSTRUG00000012086 N 0.757
XR_022366.1 Pan troglodytes ENSPTRG00000007591 N 0.757
UNK Microcebus murinus ENSMICG00000007591 N 0.750
UNK Erinaceus europaeus ENSEEUG00000013779 N 0.750
nasonia_NCBI_hmm1068274 Nasonia vitripennis nasonia_NCBI_hmm1068274 N 0.739
GK12832 Drosophila willistoni FBgn0214841 N 0.739
XP_002155288.1 Hydra magnipapillata XP_002155288.1 N 0.732
Unkl Mus musculus ENSMUSG00000015127 N 0.727
Aqu1.225680 Amphimedon queenslandica Aqu1.225680 N 0.721
UNK Oryzias latipes ENSORLG00000018637 N 0.714
UNKL Callithrix jacchus ENSCJAG00000013151 N 0.709