CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1Plus.C_40825
(
Neurospora discreta
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
estExt_Genewise1Plus.C_40825
T05140_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_40825
CCCH ZF
282
305
GVICKFYLSTGQCLRSDCRFSHDL
estExt_Genewise1Plus.C_40825
CCCH ZF
309
330
ICKYWVAGNCLARDTCVFSHDP
Links
Other
CCCH ZF
family RBPs
Other
Neurospora discreta
RBPs
39 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MBNL1
Homo sapiens
ENSG00000152601
D
0.000
MBNL3
Monodelphis domestica
ENSMODG00000015304
I
0.000
MBNL3
Homo sapiens
ENSG00000076770
I
0.000
MBNL3
Macaca mulatta
ENSMMUG00000003071
I
0.000
MBNL3
Ornithorhynchus anatinus
ENSOANG00000011697
I
0.000
MBNL2
Oryctolagus cuniculus
ENSOCUG00000000220
I
0.000
mbnl3
Xenopus tropicalis
ENSXETG00000005409
I
0.000
LOC100397507
Callithrix jacchus
ENSCJAG00000004080
I
0.000
LOC100392264
Callithrix jacchus
ENSCJAG00000001054
I
0.000
MBNL2
Canis familiaris
ENSCAFG00000005523
I
0.000
MBNL1
Gorilla gorilla
ENSGGOG00000009430
I
0.000
MBNL3
Procavia capensis
ENSPCAG00000014188
N
0.000
Q8CIQ0_RAT
Rattus norvegicus
ENSRNOG00000014076
N
0.000
MBNL1
Sus scrofa
ENSSSCG00000011720
N
0.000
MBNL3
Sus scrofa
ENSSSCG00000012676
N
0.000
MBNL3
Tupaia belangeri
ENSTBEG00000008063
N
0.000
MBNL1
Tetraodon nigroviridis
ENSTNIG00000007695
N
0.000
MBNL3
Tarsius syrichta
ENSTSYG00000014189
N
0.000
MBNL1
Procavia capensis
ENSPCAG00000002143
N
0.000
MBNL2
Otolemur garnettii
ENSOGAG00000017001
N
0.000
MBNL1
Otolemur garnettii
ENSOGAG00000009336
N
0.000
MBNL3
Cavia porcellus
ENSCPOG00000008092
N
0.000
MBNL2
Dasypus novemcinctus
ENSDNOG00000018141
N
0.000
MBNL3
Echinops telfairi
ENSETEG00000015907
N
0.000
MBNL1
Echinops telfairi
ENSETEG00000016568
N
0.000
MBNL1
Felis catus
ENSFCAG00000002293
N
0.000
MBNL2
Felis catus
ENSFCAG00000005148
N
0.000
MBNL2
Macaca mulatta
ENSMMUG00000022744
N
0.000
A5PJM0_BOVIN
Bos taurus
ENSBTAG00000004564
N
0.000
Ame_R004201
Ailuropoda melanoleuca
Ame_R004201
N
0.000