mbnl3 (Xenopus tropicalis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSXETG00000005409 T03632_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.913
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.913
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000011905 CCCH ZF 17 41
ENSXETP00000011905 CCCH ZF 58 73
ENSXETP00000011905 CCCH ZF 178 204
ENSXETP00000011905 CCCH ZF 215 238
ENSXETP00000011908 CCCH ZF 16 40
ENSXETP00000011908 CCCH ZF 57 72
ENSXETP00000011908 CCCH ZF 177 203
ENSXETP00000011908 CCCH ZF 214 237
ENSXETP00000011909 CCCH ZF 16 40
ENSXETP00000011909 CCCH ZF 57 72
ENSXETP00000011909 CCCH ZF 112 136
ENSXETP00000011909 CCCH ZF 147 170
ENSXETP00000011910 CCCH ZF 16 40
ENSXETP00000011910 CCCH ZF 57 72
ENSXETP00000011910 CCCH ZF 177 203
ENSXETP00000011910 CCCH ZF 214 237
ENSXETP00000050704 CCCH ZF 2 22
ENSXETP00000050704 CCCH ZF 127 153
ENSXETP00000050704 CCCH ZF 164 187
ENSXETP00000050705 CCCH ZF 16 40
ENSXETP00000050705 CCCH ZF 57 72
ENSXETP00000050705 CCCH ZF 177 203
ENSXETP00000050705 CCCH ZF 214 237

Links

Other CCCH ZF family RBPs
Other Xenopus tropicalis RBPs

129 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MBNL3 Ornithorhynchus anatinus ENSOANG00000011697 I 1.000
MBNL3 Meleagris gallopavo ENSMGAG00000003064 I 1.000
MBNL3 Taeniopygia guttata ENSTGUG00000002999 I 1.000
A5HMN7_CHICK Gallus gallus ENSGALG00000006066 I 1.000
MBNL3 Monodelphis domestica ENSMODG00000015304 I 0.989
MBNL3 Macropus eugenii ENSMEUG00000001183 I 0.989
MBNL3 Anolis carolinensis ENSACAG00000009557 I 0.989
MBNL3 Dasypus novemcinctus ENSDNOG00000016518 I 0.957
MBNL3_FUGRU Takifugu rubripes ENSTRUG00000012666 I 0.946
MBNL3 Gorilla gorilla ENSGGOG00000007756 I 0.946
MBNL3 Macaca mulatta ENSMMUG00000003071 I 0.946
ENSPPYG00000020726 Pongo pygmaeus ENSPPYG00000020726 I 0.946
MBNL3 Spermophilus tridecemlineatus ENSSTOG00000006715 I 0.946
MBNL3 Homo sapiens ENSG00000076770 I 0.946
MBNL3 Loxodonta africana ENSLAFG00000011822 I 0.946
MBNL3 Tetraodon nigroviridis ENSTNIG00000016812 I 0.946
MBNL3 Myotis lucifugus ENSMLUG00000016240 I 0.935
MBNL3 Oryctolagus cuniculus ENSOCUG00000014979 I 0.935
LOC100054316 Equus caballus ENSECAG00000021076 I 0.935
MBNL3 Canis familiaris ENSCAFG00000018841 I 0.935
MBNL3 Vicugna pacos ENSVPAG00000004743 I 0.935
MBNL3 Gasterosteus aculeatus ENSGACG00000017015 I 0.935
LOC100397507 Callithrix jacchus ENSCJAG00000004080 I 0.935
MBNL3 Bos taurus ENSBTAG00000014088 I 0.935
MBNL3 Sorex araneus ENSSARG00000006397 I 0.935
mbnl3 Danio rerio ENSDARG00000016085 I 0.924
MBNL3 Tursiops truncatus ENSTTRG00000016841 I 0.924
MBNL1 Loxodonta africana ENSLAFG00000017683 I 0.913
MBNL1_CHICK Gallus gallus ENSGALG00000010361 I 0.913
MBNL1 Gorilla gorilla ENSGGOG00000009430 I 0.913
MBNL1 Oryzias latipes ENSORLG00000005925 I 0.913
MBNL1 Taeniopygia guttata ENSTGUG00000011341 I 0.913
MBNL1 Spermophilus tridecemlineatus ENSSTOG00000009457 I 0.913
MBNL1 Tarsius syrichta ENSTSYG00000010491 I 0.913
MBNL1 Tursiops truncatus ENSTTRG00000009991 I 0.913
MBNL1 Vicugna pacos ENSVPAG00000006162 I 0.913
MBNL1 Pteropus vampyrus ENSPVAG00000002760 I 0.913
MBNL1 Pan troglodytes ENSPTRG00000015542 I 0.913
Mbnl1 Mus musculus ENSMUSG00000027763 I 0.913
MBNL1 Oryctolagus cuniculus ENSOCUG00000007601 I 0.913
MBNL1 Ochotona princeps ENSOPRG00000009633 I 0.913
ENSPPYG00000014218 Pongo pygmaeus ENSPPYG00000014218 I 0.913
MBNL1 Monodelphis domestica ENSMODG00000015838 I 0.913
MBNL1 Macaca mulatta ENSMMUG00000015910 I 0.913
MBNL1 Homo sapiens ENSG00000152601 D 0.913
MBNL1 Erinaceus europaeus ENSEEUG00000009449 I 0.913
MBNL1 Cavia porcellus ENSCPOG00000011516 I 0.913
MBNL1 Anolis carolinensis ENSACAG00000008014 I 0.913
MBNL1 Canis familiaris ENSCAFG00000008603 I 0.913
MBNL1 Dasypus novemcinctus ENSDNOG00000012815 I 0.913
LOC100392264 Callithrix jacchus ENSCJAG00000001054 I 0.913
Mbnl3 Dipodomys ordii ENSDORG00000012854 I 0.913
LOC100050018 Equus caballus ENSECAG00000024349 I 0.913
MBNL3 Microcebus murinus ENSMICG00000017340 I 0.911
MBNL1 Myotis lucifugus ENSMLUG00000014029 I 0.902
mbnl2 Danio rerio ENSDARG00000018460 I 0.902
Mbnl3 Mus musculus ENSMUSG00000036109 I 0.902
MBNL2 Taeniopygia guttata ENSTGUG00000011104 I 0.902
MBNL2 Meleagris gallopavo ENSMGAG00000014904 I 0.902
mbnl1 Xenopus tropicalis ENSXETG00000021655 I 0.902
MBNL1 Gasterosteus aculeatus ENSGACG00000015003 I 0.902
A3F958_CHICK Gallus gallus ENSGALG00000016890 I 0.902
ENSORLG00000005419 Oryzias latipes ENSORLG00000005419 I 0.902
Ame_R011226 Ailuropoda melanoleuca Ame_R011226 I 0.902
MBN2A_FUGRU Takifugu rubripes ENSTRUG00000010220 I 0.902
MBNL1 Takifugu rubripes ENSTRUG00000001892 I 0.902
MBNL2 Anolis carolinensis ENSACAG00000000969 I 0.902
MBNL1 Macropus eugenii ENSMEUG00000006617 I 0.900
ENSGACG00000015105 Gasterosteus aculeatus ENSGACG00000015105 I 0.891
MBNL2 Pan troglodytes ENSPTRG00000005982 I 0.891
MBNL2 Pteropus vampyrus ENSPVAG00000003263 I 0.891
LOC100403733 Callithrix jacchus ENSCJAG00000004294 I 0.891
MBNL2 Spermophilus tridecemlineatus ENSSTOG00000013149 I 0.891
MBNL2 Tursiops truncatus ENSTTRG00000008491 I 0.891
Ame_R002664 Ailuropoda melanoleuca Ame_R002664 I 0.891
MBNL2 Vicugna pacos ENSVPAG00000010696 I 0.891
MBNL2 Procavia capensis ENSPCAG00000005151 I 0.891
A5PKK4_BOVIN Bos taurus ENSBTAG00000018313 I 0.891
MBNL2 Sus scrofa ENSSSCG00000009505 I 0.891
MBNL2 Canis familiaris ENSCAFG00000005523 I 0.891
MBNL2 Sorex araneus ENSSARG00000002868 I 0.891
ENSPPYG00000005456 Pongo pygmaeus ENSPPYG00000005456 I 0.891
MBNL2 Ornithorhynchus anatinus ENSOANG00000014911 I 0.891
MBNL2 Gorilla gorilla ENSGGOG00000008349 I 0.891
MBNL2 Monodelphis domestica ENSMODG00000008566 I 0.891
MBNL2 Homo sapiens ENSG00000139793 I 0.891
MBNL2 Loxodonta africana ENSLAFG00000014497 I 0.891
MBNL2 Oryctolagus cuniculus ENSOCUG00000000220 I 0.891
MBNL2 Echinops telfairi ENSETEG00000003784 I 0.891
MBNL1 Oryzias latipes ENSORLG00000015858 I 0.891
MBNL2 Ochotona princeps ENSOPRG00000007427 I 0.891
MBNL2 Cavia porcellus ENSCPOG00000010320 I 0.891
Mbnl2 Mus musculus ENSMUSG00000022139 I 0.880
MBNL1 Takifugu rubripes ENSTRUG00000013858 I 0.880
MBNL1 Tetraodon nigroviridis ENSTNIG00000003878 I 0.880
MBNL1 Gasterosteus aculeatus ENSGACG00000010253 I 0.880
ENSTRUG00000017351 Takifugu rubripes ENSTRUG00000017351 I 0.880
MBNL2 Tarsius syrichta ENSTSYG00000004574 I 0.880
MBNL3 Oryzias latipes ENSORLG00000002183 I 0.880
MBNL2 Choloepus hoffmanni ENSCHOG00000000049 I 0.880
Mbnl2 Rattus norvegicus ENSRNOG00000010737 I 0.880
ENSGACG00000004222 Gasterosteus aculeatus ENSGACG00000004222 I 0.870
MBNL2 Erinaceus europaeus ENSEEUG00000006209 I 0.870
MBNL2 Tupaia belangeri ENSTBEG00000005178 I 0.867
MBNL2 Macropus eugenii ENSMEUG00000016143 I 0.867
Mbnl3 Rattus norvegicus ENSRNOG00000002487 I 0.866
MBNL3 Tupaia belangeri ENSTBEG00000008063 N 0.861
MBNL3 Sus scrofa ENSSSCG00000012676 N 0.861
ENSTNIG00000013977 Tetraodon nigroviridis ENSTNIG00000013977 I 0.859
MBNL3 Pteropus vampyrus ENSPVAG00000006115 I 0.853
MBNL3 Procavia capensis ENSPCAG00000014188 N 0.847
MBNL3 Cavia porcellus ENSCPOG00000008092 N 0.847
MBNL2 Myotis lucifugus ENSMLUG00000010920 I 0.844
A5PJM0_BOVIN Bos taurus ENSBTAG00000004564 N 0.833
Ame_R004201 Ailuropoda melanoleuca Ame_R004201 N 0.819
Q8CIQ0_RAT Rattus norvegicus ENSRNOG00000014076 N 0.819
MBNL1 Sus scrofa ENSSSCG00000011720 N 0.819
MBNL1 Felis catus ENSFCAG00000002293 N 0.819
MBNL1 Meleagris gallopavo ENSMGAG00000010862 N 0.819
MBNL1 Procavia capensis ENSPCAG00000002143 N 0.819
MBNL1 Tetraodon nigroviridis ENSTNIG00000007695 N 0.819
XP_001194015.1 Strongylocentrotus purpuratus XP_001194015.1 I 0.806
MBNL3 Tarsius syrichta ENSTSYG00000014189 N 0.806
MBNL2 Felis catus ENSFCAG00000005148 N 0.806
MBNL1 Ornithorhynchus anatinus ENSOANG00000007992 I 0.729
MBNL3 Echinops telfairi ENSETEG00000015907 N 0.714
XR_020327.1 Pan troglodytes ENSPTRG00000022280 N 0.714
e_gw1.156.36.1 Lottia gigantea e_gw1.156.36.1 N 0.705