CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSGGOG00000014455
(
Gorilla gorilla
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
ENSGGOG00000014455
T07258_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM4
M109_0.6
Homo sapiens
GCGCGSG
RNAcompete
Ray et al.(2013)
RNCMPT00113
1.000
RBM4
M050_0.6
Homo sapiens
GCGCGSS
RNAcompete
Ray et al.(2013)
RNCMPT00052
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000014093
RRM
4
66
LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNIN
ENSGGOP00000014093
RRM
80
142
LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMH
ENSGGOP00000014093
CCHC ZF
160
177
SGCYRCGKEGHWSKECPI
Links
Other
CCHC ZF,RRM
family RBPs
Other
Gorilla gorilla
RBPs
72 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ARB_02854
Arthroderma benhamiae
ARB_02854
N
0.000
ACLA_024590
Aspergillus clavatus
CADACLAG00002524
N
0.000
UREG_05919
Uncinocarpus reesii
UREG_05919
N
0.000
TESG_05610
Trichophyton tonsurans
TESG_05610
N
0.000
TERG_07903
Trichophyton rubrum
TERG_07903
N
0.000
SS1G_06737
Sclerotinia sclerotiorum
SS1G_06737
N
0.000
PABG_00485
Paracoccidioides brasiliensis
PABG_00485
N
0.000
MGYG_04491
Microsporum gypseum
MGYG_04491
N
0.000
HCAG_01782
Histoplasma capsulatum
HCAG_01782
N
0.000
ANIA_01188
Aspergillus nidulans
CADANIAG00001437
N
0.000