CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TERG_07903
(
Trichophyton rubrum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
TERG_07903
T31133_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TERG_07903T0
RRM
111
184
VYVTAIPLDATVSEISSLFSKCGVIAEEIDSGKPRIKMYTDEQGAFKGDALVVYFRPESVNLAIQMLDDTDFRF
TERG_07903T0
RRM
273
328
KEDIREECSKLGEVTNVVLYDKEESGIATVRFSDPECAQACVQMMNGRFFGGTQVE
Links
Other
RRM
family RBPs
Other
Trichophyton rubrum
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ARB_02854
Arthroderma benhamiae
ARB_02854
N
0.992
TESG_05610
Trichophyton tonsurans
TESG_05610
N
0.985
MGYG_04491
Microsporum gypseum
MGYG_04491
N
0.977
MCYG_01582
Microsporum canis
MCYG_01582
N
0.923
TRV_05547
Trichophyton verrucosum
TRV_05547
N
0.885
UREG_05919
Uncinocarpus reesii
UREG_05919
N
0.846
CPSG_09587
Coccidioides posadasii
CPSG_09587
N
0.838
CIMG_06929
Coccidioides immitis
CIMG_06929
N
0.838
ANIA_01188
Aspergillus nidulans
CADANIAG00001437
N
0.800
HCAG_01782
Histoplasma capsulatum
HCAG_01782
N
0.785
PABG_00485
Paracoccidioides brasiliensis
PABG_00485
N
0.785
An08g03180
Aspergillus niger
CADANGAG00006637
N
0.777
ACLA_024590
Aspergillus clavatus
CADACLAG00002524
N
0.777
BDBG_00241
Blastomyces dermatitidis
BDBG_00241
N
0.777
NFIA_014720
Neosartorya fischeri
CADNFIAG00001794
N
0.754
AFUA_1G10920
Aspergillus fumigatus
CADAFUAG00007692
N
0.754
ATEG_00286
Aspergillus terreus
CADATEAG00009538
N
0.754
e_gw1.00083.460.1
Aspergillus carbonarius
e_gw1.00083.460.1
N
0.754
AFLA_068630
Aspergillus flavus
CADAFLAG00008287
N
0.746
AO090038000318
Aspergillus oryzae
CADAORAG00009105
N
0.746
PMAA_042630
Penicillium marneffei
PMAA_042630
N
0.746
SS1G_06737
Sclerotinia sclerotiorum
SS1G_06737
N
0.702
estExt_Genewise1Plus.C_20880
Myceliophthora thermophila
estExt_Genewise1Plus.C_20880
N
0.702
e_gw1.4.1880.1
Thielavia terrestris
e_gw1.4.1880.1
N
0.702
GSTUMT00002378001
Tuber melanosporum
GSTUMT00002378001
N
0.700