CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ANIA_01188
(
Aspergillus nidulans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADANIAG00001437
T33602_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADANIAP00001437
RRM
120
193
VFVTSIPLDAEFDEIRDIFSRCGVIAEEIDSGRPRIKMYTDDEGKFKGEALVVYFRPESVNLAIQMLDDSDFRL
CADANIAP00001437
RRM
284
339
KEDIREECSKLGEVTNVVLYDKEEAGVVSVRFSNPESARACVKLMNGRFFGGTAVE
Links
Other
RRM
family RBPs
Other
Aspergillus nidulans
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.00083.460.1
Aspergillus carbonarius
e_gw1.00083.460.1
N
0.862
AFUA_1G10920
Aspergillus fumigatus
CADAFUAG00007692
N
0.854
NFIA_014720
Neosartorya fischeri
CADNFIAG00001794
N
0.854
An08g03180
Aspergillus niger
CADANGAG00006637
N
0.846
AFLA_068630
Aspergillus flavus
CADAFLAG00008287
N
0.838
AO090038000318
Aspergillus oryzae
CADAORAG00009105
N
0.838
ACLA_024590
Aspergillus clavatus
CADACLAG00002524
N
0.838
ATEG_00286
Aspergillus terreus
CADATEAG00009538
N
0.831
UREG_05919
Uncinocarpus reesii
UREG_05919
N
0.831
ARB_02854
Arthroderma benhamiae
ARB_02854
N
0.808
TESG_05610
Trichophyton tonsurans
TESG_05610
N
0.800
TERG_07903
Trichophyton rubrum
TERG_07903
N
0.800
CPSG_09587
Coccidioides posadasii
CPSG_09587
N
0.800
PMAA_042630
Penicillium marneffei
PMAA_042630
N
0.800
MGYG_04491
Microsporum gypseum
MGYG_04491
N
0.800
CIMG_06929
Coccidioides immitis
CIMG_06929
N
0.800
MCYG_01582
Microsporum canis
MCYG_01582
N
0.792
PABG_00485
Paracoccidioides brasiliensis
PABG_00485
N
0.785
BDBG_00241
Blastomyces dermatitidis
BDBG_00241
N
0.785
HCAG_01782
Histoplasma capsulatum
HCAG_01782
N
0.777
GSTUMT00002378001
Tuber melanosporum
GSTUMT00002378001
N
0.715
TRV_05547
Trichophyton verrucosum
TRV_05547
N
0.700