CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Zcchc13
(
Mus musculus
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSMUSG00000031330
T10327_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000033692
CCHC ZF
4
21
KSCFKCGHSGHWARECPK
ENSMUSP00000033692
CCHC ZF
45
61
DVCYRCGETGHYAKDCD
ENSMUSP00000033692
CCHC ZF
65
82
DTCYNCGRRGHIAKDCTQ
ENSMUSP00000033692
CCHC ZF
89
105
QCCYICSQPGHLARDCN
ENSMUSP00000033692
CCHC ZF
110
127
QKCYTCGEFGHIQKDCTQ
ENSMUSP00000033692
CCHC ZF
128
145
IKCYRCGENGHMAVNCSK
ENSMUSP00000033692
CCHC ZF
149
166
VSCYRCGESGHLARECPI
Links
Other
CCHC ZF
family RBPs
Other
Mus musculus
RBPs
42 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CAA69031
Xenopus laevis
CAA69031
N
0.806
Cnbp
Rattus norvegicus
ENSRNOG00000010239
N
0.800
CNBP
Pteropus vampyrus
ENSPVAG00000015070
N
0.776
CNBP
Pan troglodytes
ENSPTRG00000015369
N
0.808
ENSPPYG00000013423
Pongo pygmaeus
ENSPPYG00000013423
N
0.808
CNBP
Procavia capensis
ENSPCAG00000011572
N
0.808
CNBP
Ochotona princeps
ENSOPRG00000005487
N
0.808
CNBP
Otolemur garnettii
ENSOGAG00000005144
N
0.800
CNBP
Oryctolagus cuniculus
ENSOCUG00000008696
N
0.808
CNBP
Sorex araneus
ENSSARG00000011874
N
0.808
ZCCHC13
Sus scrofa
ENSSSCG00000012417
N
0.792
CNBP
Spermophilus tridecemlineatus
ENSSTOG00000000173
N
0.808
AAI69746
Xenopus laevis
AAI69746
N
0.792
AAA81168
Xenopus laevis
AAA81168
N
0.784
Ame_R005612
Ailuropoda melanoleuca
Ame_R005612
N
0.808
cnbp
Xenopus tropicalis
ENSXETG00000025147
N
0.800
CNBP
Vicugna pacos
ENSVPAG00000007138
N
0.800
CNBP
Tursiops truncatus
ENSTTRG00000015266
N
0.808
CNBP
Tarsius syrichta
ENSTSYG00000004344
N
0.800
CNBP
Taeniopygia guttata
ENSTGUG00000004001
N
0.800
ZCCHC13
Oryctolagus cuniculus
ENSOCUG00000008008
N
0.738
CNBP
Ornithorhynchus anatinus
ENSOANG00000000585
N
0.808
LOC100050146
Equus caballus
ENSECAG00000009512
N
0.808
Cnbp
Dipodomys ordii
ENSDORG00000002919
N
0.808
CNBP
Cavia porcellus
ENSCPOG00000012816
N
0.808
ZCCHC13
Cavia porcellus
ENSCPOG00000004667
N
0.760
A6ML16_CALJA
Callithrix jacchus
ENSCJAG00000017430
N
0.800
ENSCHOG00000003279
Choloepus hoffmanni
ENSCHOG00000003279
N
0.702
CNBP
Canis familiaris
ENSCAFG00000004320
N
0.808
CNBP_BOVIN
Bos taurus
ENSBTAG00000012159
N
0.808
ENSETEG00000008408
Echinops telfairi
ENSETEG00000008408
N
0.808
CNBP
Felis catus
ENSFCAG00000008665
N
0.808
CNBP
Homo sapiens
ENSG00000169714
N
0.808
Cnbp
Mus musculus
ENSMUSG00000030057
N
0.808
CNBP
Monodelphis domestica
ENSMODG00000008362
N
0.808
CNBP
Macaca mulatta
ENSMMUG00000011585
N
0.808
CNBP
Myotis lucifugus
ENSMLUG00000012554
N
0.808
CNBP
Macropus eugenii
ENSMEUG00000011699
N
0.808
CNBP
Loxodonta africana
ENSLAFG00000002502
N
0.808
CNBP
Gorilla gorilla
ENSGGOG00000010085
N
0.800
CNBP_CHICK
Gallus gallus
ENSGALG00000005001
N
0.800
CNBP
Anolis carolinensis
ENSACAG00000013192
N
0.792