cnbp (Xenopus tropicalis)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 ENSXETG00000025147 T10597_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000053876 CCHC ZF 4 21
ENSXETP00000053876 CCHC ZF 52 68
ENSXETP00000053876 CCHC ZF 72 89
ENSXETP00000053876 CCHC ZF 96 113
ENSXETP00000053876 CCHC ZF 117 134
ENSXETP00000053876 CCHC ZF 135 152
ENSXETP00000053876 CCHC ZF 156 173

Links

Other CCHC ZF family RBPs
Other Xenopus tropicalis RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CNBP_CHICK Gallus gallus ENSGALG00000005001 N 1.000
CNBP Taeniopygia guttata ENSTGUG00000004001 N 1.000
CNBP Macaca mulatta ENSMMUG00000011585 N 0.992
CNBP Monodelphis domestica ENSMODG00000008362 N 0.992
Cnbp Mus musculus ENSMUSG00000030057 N 0.992
CNBP Myotis lucifugus ENSMLUG00000012554 N 0.992
Ame_R005612 Ailuropoda melanoleuca Ame_R005612 N 0.992
CNBP Homo sapiens ENSG00000169714 N 0.992
CNBP Ornithorhynchus anatinus ENSOANG00000000585 N 0.992
CNBP Macropus eugenii ENSMEUG00000011699 N 0.992
CNBP Oryctolagus cuniculus ENSOCUG00000008696 N 0.992
CNBP Sorex araneus ENSSARG00000011874 N 0.992
CNBP Spermophilus tridecemlineatus ENSSTOG00000000173 N 0.992
CNBP Tursiops truncatus ENSTTRG00000015266 N 0.992
CNBP Pan troglodytes ENSPTRG00000015369 N 0.992
ENSPPYG00000013423 Pongo pygmaeus ENSPPYG00000013423 N 0.992
CNBP Ochotona princeps ENSOPRG00000005487 N 0.992
CNBP Procavia capensis ENSPCAG00000011572 N 0.992
CNBP Felis catus ENSFCAG00000008665 N 0.992
CNBP Loxodonta africana ENSLAFG00000002502 N 0.992
CNBP Cavia porcellus ENSCPOG00000012816 N 0.992
CNBP_BOVIN Bos taurus ENSBTAG00000012159 N 0.992
CNBP Canis familiaris ENSCAFG00000004320 N 0.992
ENSETEG00000008408 Echinops telfairi ENSETEG00000008408 N 0.992
CNBP Anolis carolinensis ENSACAG00000013192 N 0.992
Cnbp Dipodomys ordii ENSDORG00000002919 N 0.992
LOC100050146 Equus caballus ENSECAG00000009512 N 0.992
AAI69746 Xenopus laevis AAI69746 N 0.992
CNBP Vicugna pacos ENSVPAG00000007138 N 0.984
CNBP Tarsius syrichta ENSTSYG00000004344 N 0.984
AAA81168 Xenopus laevis AAA81168 N 0.984
Cnbp Rattus norvegicus ENSRNOG00000010239 N 0.984
A6ML16_CALJA Callithrix jacchus ENSCJAG00000017430 N 0.984
CNBP Otolemur garnettii ENSOGAG00000005144 N 0.984
CNBP Gorilla gorilla ENSGGOG00000010085 N 0.984
CAA69031 Xenopus laevis CAA69031 N 0.968
CNBP Pteropus vampyrus ENSPVAG00000015070 N 0.952
ZCCHC13 Sus scrofa ENSSSCG00000012417 N 0.848
ENSCHOG00000003279 Choloepus hoffmanni ENSCHOG00000003279 N 0.824
ZCCHC13 Oryctolagus cuniculus ENSOCUG00000008008 N 0.817
ENSETEG00000001978 Echinops telfairi ENSETEG00000001978 N 0.816
Zcchc13 Mus musculus ENSMUSG00000031330 N 0.800
cnbp Danio rerio ENSDARG00000070922 N 0.792
ENSDORG00000019792 Dipodomys ordii ENSDORG00000019792 N 0.784
ZCCHC13 Cavia porcellus ENSCPOG00000004667 N 0.776
Ame_R012991 Ailuropoda melanoleuca Ame_R012991 N 0.768
ENSDORG00000019854 Dipodomys ordii ENSDORG00000019854 N 0.768
zff9 Danio rerio ENSDARG00000045776 N 0.746
ZCCHC13 Oryzias latipes ENSORLG00000011453 N 0.738
ZCCHC13 Takifugu rubripes ENSTRUG00000007258 N 0.730