LOC_Os05g23170 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os05g23170 T11487_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os05g23170.1 CCHC ZF 100 117
LOC_Os05g23170.1 CCHC ZF 191 208
LOC_Os05g23170.1 CCHC ZF 227 243
LOC_Os05g23170.1 CCHC ZF 299 316
LOC_Os05g23170.1 CCHC ZF 411 428

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Aqu1.200420 Amphimedon queenslandica Aqu1.200420 N 0.000
Aqu1.220316 Amphimedon queenslandica Aqu1.220316 N 0.000
Aqu1.217817 Amphimedon queenslandica Aqu1.217817 N 0.000
Aqu1.217241 Amphimedon queenslandica Aqu1.217241 N 0.000
Aqu1.215609 Amphimedon queenslandica Aqu1.215609 N 0.000
Aqu1.211516 Amphimedon queenslandica Aqu1.211516 N 0.000
Aqu1.210879 Amphimedon queenslandica Aqu1.210879 N 0.000
Aqu1.208732 Amphimedon queenslandica Aqu1.208732 N 0.000
Aqu1.206537 Amphimedon queenslandica Aqu1.206537 N 0.000
Aqu1.203391 Amphimedon queenslandica Aqu1.203391 N 0.000
Aqu1.201766 Amphimedon queenslandica Aqu1.201766 N 0.000
Aqu1.201670 Amphimedon queenslandica Aqu1.201670 N 0.000
Aqu1.201624 Amphimedon queenslandica Aqu1.201624 N 0.000
Aqu1.201536 Amphimedon queenslandica Aqu1.201536 N 0.000
Aqu1.201112 Amphimedon queenslandica Aqu1.201112 N 0.000
Aqu1.200997 Amphimedon queenslandica Aqu1.200997 N 0.000
Aqu1.220789 Amphimedon queenslandica Aqu1.220789 N 0.000