LOC_Os06g18049 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os06g18049 T11595_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os06g18049.1 CCHC ZF 100 117
LOC_Os06g18049.1 CCHC ZF 201 218
LOC_Os06g18049.1 CCHC ZF 237 253
LOC_Os06g18049.1 CCHC ZF 309 326
LOC_Os06g18049.1 CCHC ZF 421 438

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os01g35670 Oryza sativa LOC_Os01g35670 N 1.000
LOC_Os09g01840 Oryza sativa LOC_Os09g01840 N 1.000
LOC_Os06g18058 Oryza sativa LOC_Os06g18058 N 1.000
LOC_Os04g05890 Oryza sativa LOC_Os04g05890 N 1.000
LOC_Os04g07360 Oryza sativa LOC_Os04g07360 N 1.000
LOC_Os09g01830 Oryza sativa LOC_Os09g01830 N 1.000
LOC_Os02g12990 Oryza sativa LOC_Os02g12990 N 1.000
LOC_Os07g45700 Oryza sativa LOC_Os07g45700 N 1.000
LOC_Os03g33172 Oryza sativa LOC_Os03g33172 N 0.989
LOC_Os06g17680 Oryza sativa LOC_Os06g17680 N 0.989
LOC_Os03g33182 Oryza sativa LOC_Os03g33182 N 0.989
LOC_Os04g07070 Oryza sativa LOC_Os04g07070 N 0.989
LOC_Os02g16370 Oryza sativa LOC_Os02g16370 N 0.978
LOC_Os08g27910 Oryza sativa LOC_Os08g27910 N 0.978
LOC_Os12g33660 Oryza sativa LOC_Os12g33660 N 0.978
LOC_Os04g28920 Oryza sativa LOC_Os04g28920 N 0.978
LOC_Os05g23170 Oryza sativa LOC_Os05g23170 N 0.978
LOC_Os06g17640 Oryza sativa LOC_Os06g17640 N 0.978
LOC_Os09g09120 Oryza sativa LOC_Os09g09120 N 0.978
LOC_Os08g20330 Oryza sativa LOC_Os08g20330 N 0.966
LOC_Os06g17190 Oryza sativa LOC_Os06g17190 N 0.966
LOC_Os10g31580 Oryza sativa LOC_Os10g31580 N 0.966
LOC_Os04g29160 Oryza sativa LOC_Os04g29160 N 0.966
LOC_Os06g17780 Oryza sativa LOC_Os06g17780 N 0.933
LOC_Os06g37120 Oryza sativa LOC_Os06g37120 N 0.933
LOC_Os07g17650 Oryza sativa LOC_Os07g17650 N 0.921
LOC_Os10g20050 Oryza sativa LOC_Os10g20050 N 0.910
LOC_Os03g23070 Oryza sativa LOC_Os03g23070 N 0.899
LOC_Os12g15850 Oryza sativa LOC_Os12g15850 N 0.899
LOC_Os02g16970 Oryza sativa LOC_Os02g16970 N 0.899
LOC_Os10g01008 Oryza sativa LOC_Os10g01008 N 0.899
LOC_Os03g35670 Oryza sativa LOC_Os03g35670 N 0.899
LOC_Os04g55340 Oryza sativa LOC_Os04g55340 N 0.888
LOC_Os03g29120 Oryza sativa LOC_Os03g29120 N 0.888
LOC_Os09g14220 Oryza sativa LOC_Os09g14220 N 0.854
LOC_Os10g12800 Oryza sativa LOC_Os10g12800 N 0.854
LOC_Os08g11080 Oryza sativa LOC_Os08g11080 N 0.843
LOC_Os07g47890 Oryza sativa LOC_Os07g47890 N 0.831
LOC_Os05g09100 Oryza sativa LOC_Os05g09100 N 0.764