LOC_Os03g29120 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os03g29120 T11024_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os03g29120.1 CCHC ZF 100 117
LOC_Os03g29120.1 CCHC ZF 191 208
LOC_Os03g29120.1 CCHC ZF 227 243
LOC_Os03g29120.1 CCHC ZF 299 316
LOC_Os03g29120.1 CCHC ZF 738 755

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os03g23070 Oryza sativa LOC_Os03g23070 N 0.989
LOC_Os12g15850 Oryza sativa LOC_Os12g15850 N 0.989
LOC_Os10g20050 Oryza sativa LOC_Os10g20050 N 0.978
LOC_Os02g16970 Oryza sativa LOC_Os02g16970 N 0.978
LOC_Os04g55340 Oryza sativa LOC_Os04g55340 N 0.978
LOC_Os10g01008 Oryza sativa LOC_Os10g01008 N 0.966
LOC_Os07g17650 Oryza sativa LOC_Os07g17650 N 0.966
LOC_Os03g35670 Oryza sativa LOC_Os03g35670 N 0.966
LOC_Os06g18058 Oryza sativa LOC_Os06g18058 N 0.888
LOC_Os09g01840 Oryza sativa LOC_Os09g01840 N 0.888
LOC_Os09g01830 Oryza sativa LOC_Os09g01830 N 0.888
LOC_Os10g31580 Oryza sativa LOC_Os10g31580 N 0.888
LOC_Os02g12990 Oryza sativa LOC_Os02g12990 N 0.888
LOC_Os01g35670 Oryza sativa LOC_Os01g35670 N 0.888
LOC_Os06g18049 Oryza sativa LOC_Os06g18049 N 0.888
LOC_Os07g45700 Oryza sativa LOC_Os07g45700 N 0.888
LOC_Os04g05890 Oryza sativa LOC_Os04g05890 N 0.888
LOC_Os05g23170 Oryza sativa LOC_Os05g23170 N 0.888
LOC_Os04g07360 Oryza sativa LOC_Os04g07360 N 0.888
LOC_Os02g16370 Oryza sativa LOC_Os02g16370 N 0.876
LOC_Os04g07070 Oryza sativa LOC_Os04g07070 N 0.876
LOC_Os03g33182 Oryza sativa LOC_Os03g33182 N 0.876
LOC_Os04g28920 Oryza sativa LOC_Os04g28920 N 0.876
LOC_Os06g17640 Oryza sativa LOC_Os06g17640 N 0.876
LOC_Os09g09120 Oryza sativa LOC_Os09g09120 N 0.876
LOC_Os03g33172 Oryza sativa LOC_Os03g33172 N 0.876
LOC_Os06g17680 Oryza sativa LOC_Os06g17680 N 0.876
LOC_Os08g27910 Oryza sativa LOC_Os08g27910 N 0.876
LOC_Os06g37120 Oryza sativa LOC_Os06g37120 N 0.865
LOC_Os12g33660 Oryza sativa LOC_Os12g33660 N 0.865
LOC_Os04g29160 Oryza sativa LOC_Os04g29160 N 0.854
LOC_Os06g17190 Oryza sativa LOC_Os06g17190 N 0.854
LOC_Os08g20330 Oryza sativa LOC_Os08g20330 N 0.854
LOC_Os06g17780 Oryza sativa LOC_Os06g17780 N 0.843
LOC_Os10g12800 Oryza sativa LOC_Os10g12800 N 0.831
LOC_Os08g11080 Oryza sativa LOC_Os08g11080 N 0.820
LOC_Os07g47890 Oryza sativa LOC_Os07g47890 N 0.820
LOC_Os09g14220 Oryza sativa LOC_Os09g14220 N 0.809
LOC_Os05g09100 Oryza sativa LOC_Os05g09100 N 0.730