LOC_Os05g09100 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os05g09100 T11375_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os05g09100.1 CCHC ZF 132 148
LOC_Os05g09100.1 CCHC ZF 293 310
LOC_Os05g09100.1 CCHC ZF 329 345
LOC_Os05g09100.1 CCHC ZF 401 418
LOC_Os05g09100.1 CCHC ZF 513 520

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os09g14220 Oryza sativa LOC_Os09g14220 N 0.861
LOC_Os10g12800 Oryza sativa LOC_Os10g12800 N 0.861
LOC_Os08g11080 Oryza sativa LOC_Os08g11080 N 0.848
LOC_Os07g47890 Oryza sativa LOC_Os07g47890 N 0.827
LOC_Os06g17780 Oryza sativa LOC_Os06g17780 N 0.779
LOC_Os02g12990 Oryza sativa LOC_Os02g12990 N 0.764
LOC_Os04g05890 Oryza sativa LOC_Os04g05890 N 0.764
LOC_Os09g01840 Oryza sativa LOC_Os09g01840 N 0.764
LOC_Os05g23170 Oryza sativa LOC_Os05g23170 N 0.764
LOC_Os09g01830 Oryza sativa LOC_Os09g01830 N 0.764
LOC_Os07g45700 Oryza sativa LOC_Os07g45700 N 0.764
LOC_Os06g18049 Oryza sativa LOC_Os06g18049 N 0.764
LOC_Os01g35670 Oryza sativa LOC_Os01g35670 N 0.764
LOC_Os06g18058 Oryza sativa LOC_Os06g18058 N 0.764
LOC_Os10g31580 Oryza sativa LOC_Os10g31580 N 0.764
LOC_Os04g07360 Oryza sativa LOC_Os04g07360 N 0.764
LOC_Os02g16370 Oryza sativa LOC_Os02g16370 N 0.753
LOC_Os04g07070 Oryza sativa LOC_Os04g07070 N 0.753
LOC_Os04g29160 Oryza sativa LOC_Os04g29160 N 0.753
LOC_Os04g28920 Oryza sativa LOC_Os04g28920 N 0.753
LOC_Os12g33660 Oryza sativa LOC_Os12g33660 N 0.753
LOC_Os03g33182 Oryza sativa LOC_Os03g33182 N 0.753
LOC_Os03g33172 Oryza sativa LOC_Os03g33172 N 0.753
LOC_Os10g20050 Oryza sativa LOC_Os10g20050 N 0.753
LOC_Os08g27910 Oryza sativa LOC_Os08g27910 N 0.753
LOC_Os08g20330 Oryza sativa LOC_Os08g20330 N 0.753
LOC_Os06g17680 Oryza sativa LOC_Os06g17680 N 0.753
LOC_Os06g17190 Oryza sativa LOC_Os06g17190 N 0.753
LOC_Os09g09120 Oryza sativa LOC_Os09g09120 N 0.753
LOC_Os06g17640 Oryza sativa LOC_Os06g17640 N 0.753
LOC_Os06g37120 Oryza sativa LOC_Os06g37120 N 0.750
LOC_Os07g17650 Oryza sativa LOC_Os07g17650 N 0.742
LOC_Os10g01008 Oryza sativa LOC_Os10g01008 N 0.742
LOC_Os04g55340 Oryza sativa LOC_Os04g55340 N 0.742
LOC_Os02g16970 Oryza sativa LOC_Os02g16970 N 0.742
LOC_Os03g23070 Oryza sativa LOC_Os03g23070 N 0.742
LOC_Os12g15850 Oryza sativa LOC_Os12g15850 N 0.742
LOC_Os03g35670 Oryza sativa LOC_Os03g35670 N 0.742
LOC_Os03g29120 Oryza sativa LOC_Os03g29120 N 0.730