CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
LOC_Os10g17820
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os10g17820
T12253_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os10g17820.1
CCHC ZF
617
634
GSCFNCGELGHFADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
659 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK01923.1
Cannabis sativa
PK01923.1
N
0.000
MDP0000289531
Malus x domestica
MDP0000289531
N
0.000
LjT23J20.20.nc
Lotus japonicus
LjT23J20.20.nc
N
0.000
mgf019401m
Mimulus guttatus
mgf019401m
N
0.000
mgf006636m
Mimulus guttatus
mgf006636m
N
0.000
mgf002385m
Mimulus guttatus
mgf002385m
N
0.000
Glyma13g09970.1
Glycine max
Glyma13g09970.1
N
0.000
Cucsa.107130
Cucumis sativus
Cucsa.107130
N
0.000
cassava28560.m1
Manihot esculenta
cassava28560.m1
N
0.000
B9GY53_POPTR
Populus trichocarpa
POPTR_0003s14940
N
0.000
GSVIVG00012163001
Vitis vinifera
GSVIVG00012163001
N
0.000
ppa001609m
Prunus persica
ppa001609m
N
0.000