PredSwiss_CON1061.1 (Pneumocystis carinii)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 PredSwiss_CON1061.1 T15110_0.6 Pneumocystis Genome Project (2010-Oct-5)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PredSwiss_CON1061.1 CCHC ZF 127 143

Links

Other CCHC ZF family RBPs
Other Pneumocystis carinii RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XP_002162513.1 Hydra magnipapillata XP_002162513.1 N 0.706
Scas_Contig641.28 Saccharomyces castellii Scas_Contig641.28 N 0.706
PredSwiss_CON2858.1 Pneumocystis carinii PredSwiss_CON2858.1 N 0.824
PredSwiss_ASS2010_1894.1 Pneumocystis carinii PredSwiss_ASS2010_1894.1 N 0.824
s_441997 Phytophthora sojae s_441997 N 0.706
gw1.4.1338.1 Schizophyllum commune gw1.4.1338.1 N 0.824
fgeneshPB_pg.4__237 Phycomyces blakesleeanus fgeneshPB_pg.4__237 N 0.765
fgenesh1_pm.C_scaffold_1000464 Neurospora tetrasperma fgenesh1_pm.C_scaffold_1000464 N 0.824
fgenesh1_pg.C_scaffold_47000011 Phytophthora ramorum fgenesh1_pg.C_scaffold_47000011 N 0.706
fgenesh1_pg.C_chr_1.1000545 Pichia stipitis fgenesh1_pg.C_chr_1.1000545 N 0.706
eu2.Lbscf0002g03430 Laccaria bicolor eu2.Lbscf0002g03430 N 0.824
estExt_Genewise1Plus.C_22631 Thielavia terrestris estExt_Genewise1Plus.C_22631 N 0.824
estExt_Genewise1.C_11798 Neurospora discreta estExt_Genewise1.C_11798 N 0.824
estExt_fgeneshMC_pg.C_60156 Mucor circinelloides estExt_fgeneshMC_pg.C_60156 N 0.765
estExt_fgenesh1_pm.C_30270 Myceliophthora thermophila estExt_fgenesh1_pm.C_30270 N 0.824
A7TMD2_VANPO Vanderwaltozyma polyspora A7TMD2_VANPO N 0.706
ABR070C Ashbya gossypii ABR070C N 0.706
PMAA_028520 Penicillium marneffei PMAA_028520 N 0.765
Pc21g11350 Penicillium chrysogenum Pc21g11350 N 0.765
Pa_2_10770 Podospora anserina Pa_2_10770 N 0.824
Kwal_8261 Kluyveromyces waltii Kwal_8261 N 0.706
KLTH0D08316g Kluyveromyces thermotolerans KLTH0D08316g N 0.706
KLLA0C12837g Kluyveromyces lactis KLLA0C12837g N 0.706
GSTUMT00011325001 Tuber melanosporum GSTUMT00011325001 N 0.824
Genemark.8861_g Serpula lacrymans Genemark.8861_g N 0.824
fgeneshTM_pm.1_#_792 Tremella mesenterica fgeneshTM_pm.1_#_792 N 0.765
estExt_Genewise1.C_60832 Pleurotus ostreatus estExt_Genewise1.C_60832 N 0.824
estExt_fgenesh2_pm.C_60269 Heterobasidion annosum estExt_fgenesh2_pm.C_60269 N 0.824
estExt_fgenesh2_kg.C_60291 Agaricus bisporus estExt_fgenesh2_kg.C_60291 N 0.824
estExt_fgenesh1_pg.C_70305 Cryphonectria parasitica estExt_fgenesh1_pg.C_70305 N 0.765
EDP43343.1 Malassezia globosa EDP43343.1 N 0.722
estExt_fgenesh1_pm.C_120018 Mycosphaerella fijiensis estExt_fgenesh1_pm.C_120018 N 0.706
estExt_fgenesh1_pg.C_130086 Sporobolomyces roseus estExt_fgenesh1_pg.C_130086 N 0.765
PITG_10087 Phytophthora infestans PITG_10087 N 0.706
MGYG_01930 Microsporum gypseum MGYG_01930 N 0.824
MGG_09536 Magnaporthe oryzae MGG_09536 N 0.824
MCYG_01387 Microsporum canis MCYG_01387 N 0.824
LELG_04332 Lodderomyces elongisporus LELG_04332 N 0.706
GLRG_03342 Colletotrichum graminicola GLRG_03342 N 0.824
DEHA0G03058g Debaryomyces hansenii DEHA0G03058g N 0.706
CPSG_03009 Coccidioides posadasii CPSG_03009 N 0.706
CNBG_0786 Cryptococcus neoformans CNBG_0786 N 0.706
CIMG_04249 Coccidioides immitis CIMG_04249 N 0.706
CHGG_07192 Chaetomium globosum CHGG_07192 N 0.824
CC1G_00892 Coprinopsis cinerea CC1G_00892 N 0.824
BC1G_15234 Botrytis cinerea BC1G_15234 N 0.824
AMAG_12234 Allomyces macrogynus AMAG_12234 N 0.765
RO3G_12479 Rhizopus oryzae RO3G_12479 N 0.765
SJAG_02668 Schizosaccharomyces japonicus SJAG_02668 N 0.706
e_gwh2.3.362.1 Phanerochaete chrysosporium e_gwh2.3.362.1 N 0.824
e_gw1.311.2.1 Postia placenta e_gw1.311.2.1 N 0.824
e_gw1.135.14.1 Postia placenta e_gw1.135.14.1 N 0.824
SPBP8B7.15c Schizosaccharomyces pombe SPBP8B7.15c N 0.765
NCU06718 Neurospora crassa NCU06718 N 0.824
VDBG_00415 Verticillium albo atrum VDBG_00415 N 0.824
VDAG_00026 Verticillium dahliae VDAG_00026 N 0.824
UREG_05672 Uncinocarpus reesii UREG_05672 N 0.765
UM00321 Ustilago maydis UM00321 N 0.706
TESG_06028 Trichophyton tonsurans TESG_06028 N 0.824
TERG_04664 Trichophyton rubrum TERG_04664 N 0.824
TEQG_07175 Trichophyton equinum TEQG_07175 N 0.824
SS1G_05474 Sclerotinia sclerotiorum SS1G_05474 N 0.824
SPPG_06553 Spizellomyces punctatus SPPG_06553 N 0.706
AMAG_05802 Allomyces macrogynus AMAG_05802 N 0.765