fgeneshPB_pg.4__237 (Phycomyces blakesleeanus)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgeneshPB_pg.4__237 T14436_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgeneshPB_pg.4__237 CCHC ZF 234 250

Links

Other CCHC ZF family RBPs
Other Phycomyces blakesleeanus RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgeneshMC_pg.C_60156 Mucor circinelloides estExt_fgeneshMC_pg.C_60156 N 1.000
RO3G_12479 Rhizopus oryzae RO3G_12479 N 1.000
SPPG_06553 Spizellomyces punctatus SPPG_06553 N 0.882
Genemark.8861_g Serpula lacrymans Genemark.8861_g N 0.824
estExt_Genewise1.C_60832 Pleurotus ostreatus estExt_Genewise1.C_60832 N 0.824
gw1.4.1338.1 Schizophyllum commune gw1.4.1338.1 N 0.824
e_gw1.311.2.1 Postia placenta e_gw1.311.2.1 N 0.824
e_gw1.135.14.1 Postia placenta e_gw1.135.14.1 N 0.824
estExt_fgenesh2_pm.C_60269 Heterobasidion annosum estExt_fgenesh2_pm.C_60269 N 0.824
e_gwh2.3.362.1 Phanerochaete chrysosporium e_gwh2.3.362.1 N 0.824
CC1G_00892 Coprinopsis cinerea CC1G_00892 N 0.824
eu2.Lbscf0002g03430 Laccaria bicolor eu2.Lbscf0002g03430 N 0.824
GP3.078420 Batrachochytrium dendrobatidis GP3.078420 N 0.765
PITG_10087 Phytophthora infestans PITG_10087 N 0.765
PredSwiss_CON1061.1 Pneumocystis carinii PredSwiss_CON1061.1 N 0.765
s_441997 Phytophthora sojae s_441997 N 0.765
estExt_fgenesh2_kg.C_60291 Agaricus bisporus estExt_fgenesh2_kg.C_60291 N 0.765
e_gw1.0.2594.1 Selaginella moellendorfii e_gw1.0.2594.1 N 0.765
SPBP8B7.15c Schizosaccharomyces pombe SPBP8B7.15c N 0.765
ECU09_0340 Encephalitozoon cuniculi ECU09_0340 N 0.765
Ein09_0330 Encephalitozoon intestinalis Ein09_0330 N 0.765
estExt_fgenesh1_pg.C_130086 Sporobolomyces roseus estExt_fgenesh1_pg.C_130086 N 0.765
EFA83972.1 Polysphondylium pallidum EFA83972.1 N 0.765
fgenesh1_pg.C_scaffold_47000011 Phytophthora ramorum fgenesh1_pg.C_scaffold_47000011 N 0.765
GSTUMT00011325001 Tuber melanosporum GSTUMT00011325001 N 0.765
fgeneshTM_pm.1_#_792 Tremella mesenterica fgeneshTM_pm.1_#_792 N 0.765
AMAG_05802 Allomyces macrogynus AMAG_05802 N 0.765
AMAG_12234 Allomyces macrogynus AMAG_12234 N 0.765
EDP43343.1 Malassezia globosa EDP43343.1 N 0.722
e_gw1.84.86.1 Physcomitrella patens e_gw1.84.86.1 N 0.706
estExt_fgenesh1_pm.C_30270 Myceliophthora thermophila estExt_fgenesh1_pm.C_30270 N 0.706
NCU06718 Neurospora crassa NCU06718 N 0.706
ENSTRUG00000009471 Takifugu rubripes ENSTRUG00000009471 N 0.706
estExt_Genewise1Plus.C_22631 Thielavia terrestris estExt_Genewise1Plus.C_22631 N 0.706
estExt_Genewise1.C_11798 Neurospora discreta estExt_Genewise1.C_11798 N 0.706
estExt_fgeneshTA2_pg.C_20820 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_20820 N 0.706
estExt_fgenesh1_pm.C_120018 Mycosphaerella fijiensis estExt_fgenesh1_pm.C_120018 N 0.706
fgenesh1_pm.C_scaffold_1000464 Neurospora tetrasperma fgenesh1_pm.C_scaffold_1000464 N 0.706
e_gw1.147.34.1 Physcomitrella patens e_gw1.147.34.1 N 0.706
ENSTNIG00000005451 Tetraodon nigroviridis ENSTNIG00000005451 N 0.706
SJAG_02668 Schizosaccharomyces japonicus SJAG_02668 N 0.706
BC1G_15234 Botrytis cinerea BC1G_15234 N 0.706
CHGG_07192 Chaetomium globosum CHGG_07192 N 0.706
CIMG_04249 Coccidioides immitis CIMG_04249 N 0.706
CNBG_0786 Cryptococcus neoformans CNBG_0786 N 0.706
XP_002162513.1 Hydra magnipapillata XP_002162513.1 N 0.706
Pa_2_10770 Podospora anserina Pa_2_10770 N 0.706
PredSwiss_ASS2010_1894.1 Pneumocystis carinii PredSwiss_ASS2010_1894.1 N 0.706
PredSwiss_CON2858.1 Pneumocystis carinii PredSwiss_CON2858.1 N 0.706
estExt_fgenesh1_pg.C_70305 Cryphonectria parasitica estExt_fgenesh1_pg.C_70305 N 0.706
CPSG_03009 Coccidioides posadasii CPSG_03009 N 0.706
GLRG_03342 Colletotrichum graminicola GLRG_03342 N 0.706
TERG_04664 Trichophyton rubrum TERG_04664 N 0.706
TESG_06028 Trichophyton tonsurans TESG_06028 N 0.706
VDAG_00026 Verticillium dahliae VDAG_00026 N 0.706
VDBG_00415 Verticillium albo atrum VDBG_00415 N 0.706
TEQG_07175 Trichophyton equinum TEQG_07175 N 0.706
SS1G_05474 Sclerotinia sclerotiorum SS1G_05474 N 0.706
MCYG_01387 Microsporum canis MCYG_01387 N 0.706
MGG_09536 Magnaporthe oryzae MGG_09536 N 0.706
MGYG_01930 Microsporum gypseum MGYG_01930 N 0.706
DDB_G0279003 Dictyostelium discoideum DDB_G0279003 N 0.706