estExt_fgenesh1_pg.C_130086 (Sporobolomyces roseus)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 estExt_fgenesh1_pg.C_130086 T13590_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_130086 CCHC ZF 446 462

Links

Other CCHC ZF family RBPs
Other Sporobolomyces roseus RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
EDP43343.1 Malassezia globosa EDP43343.1 N 0.944
SPBP8B7.15c Schizosaccharomyces pombe SPBP8B7.15c N 0.941
e_gw1.135.14.1 Postia placenta e_gw1.135.14.1 N 0.941
estExt_Genewise1.C_60832 Pleurotus ostreatus estExt_Genewise1.C_60832 N 0.941
fgeneshTM_pm.1_#_792 Tremella mesenterica fgeneshTM_pm.1_#_792 N 0.941
Genemark.8861_g Serpula lacrymans Genemark.8861_g N 0.941
eu2.Lbscf0002g03430 Laccaria bicolor eu2.Lbscf0002g03430 N 0.941
CC1G_00892 Coprinopsis cinerea CC1G_00892 N 0.941
e_gwh2.3.362.1 Phanerochaete chrysosporium e_gwh2.3.362.1 N 0.941
e_gw1.311.2.1 Postia placenta e_gw1.311.2.1 N 0.941
estExt_fgenesh2_pm.C_60269 Heterobasidion annosum estExt_fgenesh2_pm.C_60269 N 0.941
estExt_fgenesh2_kg.C_60291 Agaricus bisporus estExt_fgenesh2_kg.C_60291 N 0.882
SJAG_02668 Schizosaccharomyces japonicus SJAG_02668 N 0.882
GLRG_03342 Colletotrichum graminicola GLRG_03342 N 0.882
BC1G_15234 Botrytis cinerea BC1G_15234 N 0.882
CNBG_0786 Cryptococcus neoformans CNBG_0786 N 0.882
Pa_2_10770 Podospora anserina Pa_2_10770 N 0.882
MGG_09536 Magnaporthe oryzae MGG_09536 N 0.882
GSTUMT00011325001 Tuber melanosporum GSTUMT00011325001 N 0.882
SS1G_05474 Sclerotinia sclerotiorum SS1G_05474 N 0.882
VDAG_00026 Verticillium dahliae VDAG_00026 N 0.882
gw1.4.1338.1 Schizophyllum commune gw1.4.1338.1 N 0.882
CHGG_07192 Chaetomium globosum CHGG_07192 N 0.882
VDBG_00415 Verticillium albo atrum VDBG_00415 N 0.882
NCU06718 Neurospora crassa NCU06718 N 0.882
fgenesh1_pm.C_scaffold_1000464 Neurospora tetrasperma fgenesh1_pm.C_scaffold_1000464 N 0.882
estExt_Genewise1Plus.C_22631 Thielavia terrestris estExt_Genewise1Plus.C_22631 N 0.882
estExt_fgenesh1_pm.C_30270 Myceliophthora thermophila estExt_fgenesh1_pm.C_30270 N 0.882
estExt_Genewise1.C_11798 Neurospora discreta estExt_Genewise1.C_11798 N 0.882
PredSwiss_CON2858.1 Pneumocystis carinii PredSwiss_CON2858.1 N 0.882
PredSwiss_ASS2010_1894.1 Pneumocystis carinii PredSwiss_ASS2010_1894.1 N 0.882
CIMG_04249 Coccidioides immitis CIMG_04249 N 0.824
CPSG_03009 Coccidioides posadasii CPSG_03009 N 0.824
MGYG_01930 Microsporum gypseum MGYG_01930 N 0.824
SPPG_06553 Spizellomyces punctatus SPPG_06553 N 0.824
TEQG_07175 Trichophyton equinum TEQG_07175 N 0.824
TERG_04664 Trichophyton rubrum TERG_04664 N 0.824
TESG_06028 Trichophyton tonsurans TESG_06028 N 0.824
MCYG_01387 Microsporum canis MCYG_01387 N 0.824
AMAG_05802 Allomyces macrogynus AMAG_05802 N 0.824
AMAG_12234 Allomyces macrogynus AMAG_12234 N 0.824
estExt_fgenesh1_pg.C_70305 Cryphonectria parasitica estExt_fgenesh1_pg.C_70305 N 0.824
UM00321 Ustilago maydis UM00321 N 0.765
UREG_05672 Uncinocarpus reesii UREG_05672 N 0.765
fgeneshPB_pg.4__237 Phycomyces blakesleeanus fgeneshPB_pg.4__237 N 0.765
estExtDG_Genemark1.C_1080017 Emiliania huxleyi estExtDG_Genemark1.C_1080017 N 0.765
estExt_fgeneshMC_pg.C_60156 Mucor circinelloides estExt_fgeneshMC_pg.C_60156 N 0.765
fgenesh1_pg.C_chr_1.1000545 Pichia stipitis fgenesh1_pg.C_chr_1.1000545 N 0.765
RO3G_12479 Rhizopus oryzae RO3G_12479 N 0.765
PredSwiss_CON1061.1 Pneumocystis carinii PredSwiss_CON1061.1 N 0.765
PMAA_028520 Penicillium marneffei PMAA_028520 N 0.765
estExt_fgenesh1_pm.C_120018 Mycosphaerella fijiensis estExt_fgenesh1_pm.C_120018 N 0.765
LELG_04332 Lodderomyces elongisporus LELG_04332 N 0.765
Pc21g11350 Penicillium chrysogenum Pc21g11350 N 0.765
fgenesh2_pg.6_#_9 Fragilariopsis cylindrus fgenesh2_pg.6_#_9 N 0.722
DEHA0G03058g Debaryomyces hansenii DEHA0G03058g N 0.706
e_gw1.0.2594.1 Selaginella moellendorfii e_gw1.0.2594.1 N 0.706
e_gw1.147.34.1 Physcomitrella patens e_gw1.147.34.1 N 0.706
estExt_fgeneshTA2_pg.C_20820 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_20820 N 0.706
estExt_Genemark1.C_20148 Coccomyxa C 169 estExt_Genemark1.C_20148 N 0.706
KLLA0C12837g Kluyveromyces lactis KLLA0C12837g N 0.706
e_gw1.84.86.1 Physcomitrella patens e_gw1.84.86.1 N 0.706
Ein09_0330 Encephalitozoon intestinalis Ein09_0330 N 0.706
fgenesh1_pg.C_scaffold_47000011 Phytophthora ramorum fgenesh1_pg.C_scaffold_47000011 N 0.706
Kwal_8261 Kluyveromyces waltii Kwal_8261 N 0.706
s_441997 Phytophthora sojae s_441997 N 0.706
KLTH0D08316g Kluyveromyces thermotolerans KLTH0D08316g N 0.706
ABR070C Ashbya gossypii ABR070C N 0.706
GP3.078420 Batrachochytrium dendrobatidis GP3.078420 N 0.706
Scas_Contig641.28 Saccharomyces castellii Scas_Contig641.28 N 0.706
PITG_10087 Phytophthora infestans PITG_10087 N 0.706
ECU09_0340 Encephalitozoon cuniculi ECU09_0340 N 0.706