CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GL24525
(
Drosophila persimilis
)
CCHH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF10283 (zf-CCHH)
IPR019406
FBgn0162114
T16558_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0188632
CCHH ZF
4
29
EDCKYGEKCYQRNAAHLAKYNHPAKT
Links
Other
CCHH ZF
family RBPs
Other
Drosophila persimilis
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Npl3
Saccharomyces cerevisiae
YDR432W
D
0.000
SAKL0G05258g
Lachancea kluyveri
SAKL0G05258g
I
0.000
Kwal_18572
Kluyveromyces waltii
Kwal_18572
I
0.000
KLTH0G04114g
Kluyveromyces thermotolerans
KLTH0G04114g
I
0.000
KLLA0B00979g
Kluyveromyces lactis
KLLA0B00979g
I
0.000
A7TFW1_VANPO
Vanderwaltozyma polyspora
A7TFW1_VANPO
I
0.000
5654_YDR432W
Saccharomyces paradoxus
5654_YDR432W
I
0.000
5461_YDR432W
Saccharomyces bayanus
5461_YDR432W
I
0.000
5166_YDR432W
Saccharomyces mikatae
5166_YDR432W
I
0.000
Scas_Contig717.41
Saccharomyces castellii
Scas_Contig717.41
I
0.000
ZYRO0D12892g
Zygosaccharomyces rouxii
ZYRO0D12892g
I
0.000