CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G042623
(
Zea mays
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
GRMZM2G042623
T24942_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G042623_P01
PUF
537
571
EIAGHVVEFSADQYGSRFIQQKLETASTEEKDMVF
GRMZM2G042623_P01
PUF
573
607
EIMPQALTLMTDVFGNYVVQKFFEHGSTAQIKELA
GRMZM2G042623_P01
PUF
609
643
QLIGRVLALSLQMYGCRVIQKAIEVVDLELQTKMV
GRMZM2G042623_P01
PUF
645
679
ELEGHVMRCVRDQNGNHVIQKCIECIPQHAIEFII
GRMZM2G042623_P01
PUF
681
715
TFYGQVVMLSTHPYGCRVIQRVLEHCDDPKTQQIM
GRMZM2G042623_P01
PUF
718
752
EILQSVCLLAQDQYGNYVVQHVLEHGKPHERSAII
GRMZM2G042623_P01
PUF
754
788
KLIGQIVQMSQQKFASNVIEKCLVFGNPVERQVLI
GRMZM2G042623_P01
PUF
798
830
SEPLEVMMKDQFGNYVVQKVLETCDDQQREMIL
GRMZM2G042623_P02
PUF
533
567
EIAGHVVEFSADQYGSRFIQQKLETASTEEKDMVF
GRMZM2G042623_P02
PUF
569
603
EIMPQALTLMTDVFGNYVVQKFFEHGSTAQIKELA
GRMZM2G042623_P02
PUF
605
639
QLIGRVLALSLQMYGCRVIQKAIEVVDLELQTKMV
GRMZM2G042623_P02
PUF
641
675
ELEGHVMRCVRDQNGNHVIQKCIECIPQHAIEFII
GRMZM2G042623_P02
PUF
677
711
TFYGQVVMLSTHPYGCRVIQRVLEHCDDPKTQQIM
GRMZM2G042623_P02
PUF
714
748
EILQSVCLLAQDQYGNYVVQHVLEHGKPHERSAII
GRMZM2G042623_P02
PUF
750
784
KLIGQIVQMSQQKFASNVIEKCLVFGNPVERQVLI
GRMZM2G042623_P02
PUF
794
826
SEPLEVMMKDQFGNYVVQKVLETCDDQQREMIL
Links
Other
PUF
family RBPs
Other
Zea mays
RBPs
79 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SLTM
Macaca mulatta
ENSMMUG00000022200
N
0.000
SLTM
Oryzias latipes
ENSORLG00000008161
N
0.000
SAFB
Oryzias latipes
ENSORLG00000016989
N
0.000
SAFB2
Procavia capensis
ENSPCAG00000006352
N
0.000
ENSPPYG00000006515
Pongo pygmaeus
ENSPPYG00000006515
N
0.000
ENSPPYG00000009427
Pongo pygmaeus
ENSPPYG00000009427
N
0.000
ENSPPYG00000009428
Pongo pygmaeus
ENSPPYG00000009428
N
0.000
SLTM
Pan troglodytes
ENSPTRG00000007121
N
0.000
SAFB2
Pan troglodytes
ENSPTRG00000010334
N
0.000
SAFB
Pan troglodytes
ENSPTRG00000010335
N
0.000
SAFB
Pteropus vampyrus
ENSPVAG00000004913
N
0.000
SLTM
Pteropus vampyrus
ENSPVAG00000015056
N
0.000
Sltm
Rattus norvegicus
ENSRNOG00000013708
N
0.000
SAFB
Ochotona princeps
ENSOPRG00000011561
N
0.000
SLTM
Otolemur garnettii
ENSOGAG00000011297
N
0.000
SAFB2
Monodelphis domestica
ENSMODG00000001178
N
0.000
ENSMODG00000001236
Monodelphis domestica
ENSMODG00000001236
N
0.000
XM_001377567.1
Monodelphis domestica
ENSMODG00000008794
N
0.000
Sltm
Mus musculus
ENSMUSG00000032212
N
0.000
Safb2
Mus musculus
ENSMUSG00000042625
N
0.000
Safb
Mus musculus
ENSMUSG00000071054
N
0.000
SLTM
Ornithorhynchus anatinus
ENSOANG00000012311
N
0.000
ENSOANG00000013644
Ornithorhynchus anatinus
ENSOANG00000013644
N
0.000
SAFB2
Oryctolagus cuniculus
ENSOCUG00000001592
N
0.000
SLTM
Oryctolagus cuniculus
ENSOCUG00000003327
N
0.000
SAFB
Oryctolagus cuniculus
ENSOCUG00000014628
N
0.000
SAFB2
Otolemur garnettii
ENSOGAG00000006855
N
0.000
SAFB2
Sorex araneus
ENSSARG00000000649
N
0.000
SAFB
Sorex araneus
ENSSARG00000010475
N
0.000
ENSSSCG00000004591
Sus scrofa
ENSSSCG00000004591
N
0.000
SAFB
Tursiops truncatus
ENSTTRG00000013588
N
0.000
SLTM
Vicugna pacos
ENSVPAG00000008606
N
0.000
SAFB
Vicugna pacos
ENSVPAG00000012043
N
0.000
sltm
Xenopus tropicalis
ENSXETG00000010840
N
0.000
168846
Helobdella robusta
168846
N
0.000
estExt_fgenesh2_pg.C_3630023
Branchiostoma floridae
estExt_fgenesh2_pg.C_3630023
N
0.000
estExt_fgenesh2_pg.C_4200008
Branchiostoma floridae
estExt_fgenesh2_pg.C_4200008
N
0.000
fgenesh1_pm.C_scaffold_151000005
Capitella teleta
fgenesh1_pm.C_scaffold_151000005
N
0.000
Ame_R015170
Ailuropoda melanoleuca
Ame_R015170
N
0.000
Ame_R016388
Ailuropoda melanoleuca
Ame_R016388
N
0.000
Ame_R016389
Ailuropoda melanoleuca
Ame_R016389
N
0.000
AAI00172
Xenopus laevis
AAI00172
N
0.000
SAFB2
Tursiops truncatus
ENSTTRG00000013585
N
0.000
SLTM
Tursiops truncatus
ENSTTRG00000005246
N
0.000
ENSSSCG00000004592
Sus scrofa
ENSSSCG00000004592
N
0.000
ENSSSCG00000013523
Sus scrofa
ENSSSCG00000013523
N
0.000
SAFB2
Spermophilus tridecemlineatus
ENSSTOG00000002758
N
0.000
SLTM
Tupaia belangeri
ENSTBEG00000000945
N
0.000
SAFB-1
Taeniopygia guttata
ENSTGUG00000000489
N
0.000
SAFB-2
Taeniopygia guttata
ENSTGUG00000000502
N
0.000
SLTM
Taeniopygia guttata
ENSTGUG00000006017
N
0.000
SLTM
Tetraodon nigroviridis
ENSTNIG00000009334
N
0.000
ENSTNIG00000015470
Tetraodon nigroviridis
ENSTNIG00000015470
N
0.000
SAFB
Takifugu rubripes
ENSTRUG00000003567
N
0.000
SLTM
Takifugu rubripes
ENSTRUG00000017767
N
0.000
SAFB
Tarsius syrichta
ENSTSYG00000001851
N
0.000
Q498L2
Xenopus laevis
Q498L2
N
0.000
SAFB
Macaca mulatta
ENSMMUG00000017970
N
0.000
amel4_ncbi_hmm13354
Apis mellifera
amel4_ncbi_hmm13354
N
0.000
SLTM
Callithrix jacchus
ENSCJAG00000020395
N
0.000
SAFB2
Cavia porcellus
ENSCPOG00000011394
N
0.000
SLTM
Cavia porcellus
ENSCPOG00000026109
N
0.000
SAFB
Cavia porcellus
ENSCPOG00000026322
N
0.000
ENSDARG00000017150
Danio rerio
ENSDARG00000017150
N
0.000
safb
Danio rerio
ENSDARG00000020467
N
0.000
SLTM
Dasypus novemcinctus
ENSDNOG00000002975
N
0.000
SAFB
Dasypus novemcinctus
ENSDNOG00000015746
N
0.000
Sltm
Dipodomys ordii
ENSDORG00000007463
N
0.000
Safb2
Dipodomys ordii
ENSDORG00000016199
N
0.000
Safb
Dipodomys ordii
ENSDORG00000016200
N
0.000
LOC100064953
Equus caballus
ENSECAG00000018659
N
0.000
SAFB2
Callithrix jacchus
ENSCJAG00000017205
N
0.000
SAFB
Callithrix jacchus
ENSCJAG00000017081
N
0.000
SLTM
Anolis carolinensis
ENSACAG00000015120
N
0.000
ENSACAG00000016893
Anolis carolinensis
ENSACAG00000016893
N
0.000
ENSACAG00000016928
Anolis carolinensis
ENSACAG00000016928
N
0.000
SAFB2
Bos taurus
ENSBTAG00000001790
N
0.000
ENSBTAG00000007875
Bos taurus
ENSBTAG00000007875
N
0.000
SLTM
Bos taurus
ENSBTAG00000011319
N
0.000
LOC787645
Bos taurus
ENSBTAG00000035584
N
0.000
A7E314_BOVIN
Bos taurus
ENSBTAG00000035585
N
0.000
SLTM
Canis familiaris
ENSCAFG00000016586
N
0.000
SAFB
Canis familiaris
ENSCAFG00000018803
N
0.000
SAFB2
Canis familiaris
ENSCAFG00000018814
N
0.000
SLTM
Choloepus hoffmanni
ENSCHOG00000001125
N
0.000
LOC100064922
Equus caballus
ENSECAG00000018978
N
0.000
SLTM
Erinaceus europaeus
ENSEEUG00000000580
N
0.000
SLTM
Echinops telfairi
ENSETEG00000008003
N
0.000
SAFB
Gorilla gorilla
ENSGGOG00000015109
N
0.000
SAFB2
Loxodonta africana
ENSLAFG00000003836
N
0.000
SAFB
Loxodonta africana
ENSLAFG00000003840
N
0.000
SLTM
Loxodonta africana
ENSLAFG00000017922
N
0.000
SAFB2
Macropus eugenii
ENSMEUG00000002456
N
0.000
ENSMGAG00000001051
Meleagris gallopavo
ENSMGAG00000001051
N
0.000
ENSMGAG00000001101
Meleagris gallopavo
ENSMGAG00000001101
N
0.000
SLTM
Meleagris gallopavo
ENSMGAG00000005313
N
0.000
SAFB
Microcebus murinus
ENSMICG00000008739
N
0.000
SLTM
Microcebus murinus
ENSMICG00000013069
N
0.000
SAFB2
Myotis lucifugus
ENSMLUG00000001050
N
0.000
SAFB
Myotis lucifugus
ENSMLUG00000001081
N
0.000
SAFB2
Gorilla gorilla
ENSGGOG00000015093
N
0.000
SAFB2
Gallus gallus
ENSGALG00000013365
N
0.000
SAFB2
Echinops telfairi
ENSETEG00000016756
N
0.000
SAFB
Echinops telfairi
ENSETEG00000018679
N
0.000
SLTM
Felis catus
ENSFCAG00000004826
N
0.000
SAFB2
Felis catus
ENSFCAG00000011834
N
0.000
SAFB
Felis catus
ENSFCAG00000011835
N
0.000
SAFB2
Homo sapiens
ENSG00000130254
N
0.000
SLTM
Homo sapiens
ENSG00000137776
N
0.000
SAFB
Homo sapiens
ENSG00000160633
N
0.000
SAFB
Gasterosteus aculeatus
ENSGACG00000011385
N
0.000
SLTM
Gasterosteus aculeatus
ENSGACG00000015814
N
0.000
SAFB2
Gallus gallus
ENSGALG00000001948
N
0.000
SLTM
Gallus gallus
ENSGALG00000004192
N
0.000
SAFB2
Macaca mulatta
ENSMMUG00000017968
N
0.000