CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBCK1
(
Erinaceus europaeus
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
ENSEEUG00000013802
T26431_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSEEUP00000012596
RanBP ZF
182
207
GWQCPGCTFINKPTRPGCEMCCQARP
Links
Other
RanBP ZF
family RBPs
Other
Erinaceus europaeus
RBPs
41 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT1G54930
Arabidopsis thaliana
AT1G54930-TAIR-G
N
0.000
fgeneshEH_pg.19__19
Emiliania huxleyi
fgeneshEH_pg.19__19
N
0.000
estExt_fgenesh4_pg.C_270089
Volvox carteri
estExt_fgenesh4_pg.C_270089
N
0.000
63792
Aureococcus anophagefferens
63792
N
0.000
LOC_Os12g39190
Oryza sativa
LOC_Os12g39190
N
0.000
LOC_Os12g25080
Oryza sativa
LOC_Os12g25080
N
0.000
LOC_Os08g39174
Oryza sativa
LOC_Os08g39174
N
0.000
LOC_Os05g49600
Oryza sativa
LOC_Os05g49600
N
0.000
LOC_Os04g06220
Oryza sativa
LOC_Os04g06220
N
0.000
LOC_Os04g04120
Oryza sativa
LOC_Os04g04120
N
0.000
LOC_Os03g20690
Oryza sativa
LOC_Os03g20690
N
0.000
XM_002894567.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1003658
N
0.000
Medtr1g103590
Medicago truncatula
Medtr1g103590
N
0.000