CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBCK1
(
Erinaceus europaeus
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
ENSEEUG00000013802
T26431_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSEEUP00000012596
RanBP ZF
182
207
GWQCPGCTFINKPTRPGCEMCCQARP
Links
Other
RanBP ZF
family RBPs
Other
Erinaceus europaeus
RBPs
41 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBCK1
Spermophilus tridecemlineatus
ENSSTOG00000008625
N
1.000
RBCK1
Procavia capensis
ENSPCAG00000001109
N
1.000
RBCK1
Felis catus
ENSFCAG00000003278
N
0.962
Rbck1
Rattus norvegicus
ENSRNOG00000006695
N
0.962
RBCK1
Pteropus vampyrus
ENSPVAG00000011249
N
0.962
RBCK1
Pan troglodytes
ENSPTRG00000013144
N
0.962
RBCK1
Homo sapiens
ENSG00000125826
N
0.962
RBCK1
Tupaia belangeri
ENSTBEG00000013740
N
0.962
Ame_R013963
Ailuropoda melanoleuca
Ame_R013963
N
0.962
RBCK1
Vicugna pacos
ENSVPAG00000000451
N
0.962
RBCK1
Tursiops truncatus
ENSTTRG00000005104
N
0.962
A6ML91_CALJA
Callithrix jacchus
ENSCJAG00000020846
N
0.962
RBCK1
Oryctolagus cuniculus
ENSOCUG00000007636
N
0.962
ENSPPYG00000010868
Pongo pygmaeus
ENSPPYG00000010868
N
0.962
RBCK1
Microcebus murinus
ENSMICG00000013495
N
0.962
RBCK1
Gorilla gorilla
ENSGGOG00000008982
N
0.962
RBCK1
Macaca mulatta
ENSMMUG00000012601
N
0.962
RBCK1
Loxodonta africana
ENSLAFG00000027558
N
0.962
Rbck1
Mus musculus
ENSMUSG00000027466
N
0.962
RBCK1
Cavia porcellus
ENSCPOG00000005720
N
0.926
Q1JPC8_BOVIN
Bos taurus
ENSBTAG00000017002
N
0.923
RBCK1
Canis familiaris
ENSCAFG00000006921
N
0.889
RBCK1
Dasypus novemcinctus
ENSDNOG00000017407
N
0.862
RBCK1
Monodelphis domestica
ENSMODG00000019512
N
0.852
ENSMGAG00000007903
Meleagris gallopavo
ENSMGAG00000007903
N
0.808
SHARPIN
Anolis carolinensis
ENSACAG00000007245
N
0.778
SHARPIN
Gallus gallus
ENSGALG00000022341
N
0.750
LOC100065232
Equus caballus
ENSECAG00000001400
N
0.731
SHARPIN
Cavia porcellus
ENSCPOG00000013242
N
0.731
CU693494.1
Danio rerio
ENSDARG00000076995
N
0.731
LOC100392136
Callithrix jacchus
ENSCJAG00000021452
N
0.731
SHARPIN
Sus scrofa
ENSSSCG00000005914
N
0.731
SHARPIN
Bos taurus
ENSBTAG00000012235
N
0.731
ENSTNIG00000008521
Tetraodon nigroviridis
ENSTNIG00000008521
N
0.731
ENSTRUG00000006949
Takifugu rubripes
ENSTRUG00000006949
N
0.731
rbck1
Danio rerio
ENSDARG00000031954
N
0.714
ENSGACG00000002544
Gasterosteus aculeatus
ENSGACG00000002544
N
0.704
ENSGACG00000017834
Gasterosteus aculeatus
ENSGACG00000017834
N
0.704
ENSORLG00000017281
Oryzias latipes
ENSORLG00000017281
N
0.704
ENSTRUG00000011046
Takifugu rubripes
ENSTRUG00000011046
N
0.704
SHARPIN
Monodelphis domestica
ENSMODG00000010491
N
0.704