CBG12494 (Caenorhabditis briggsae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CBG12494 T33907_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
CBG12494 RRM 243 313

Links

Other RRM family RBPs
Other Caenorhabditis briggsae RBPs

163 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.775
estExt_fgenesh3_pm.C_240021 Chlorella NC64A estExt_fgenesh3_pm.C_240021 N 0.732
Aqu1.223583 Amphimedon queenslandica Aqu1.223583 N 0.732
83285 Helobdella robusta 83285 N 0.732
SNAPOd2T00004354001 Oikopleura dioica SNAPOd2T00004354001 N 0.761
TGVEG_068650 Toxoplasma gondii TGVEG_068650 N 0.000
TGME49_027850 Toxoplasma gondii TGME49_027850 N 0.000
TGGT1_083150 Toxoplasma gondii TGGT1_083150 N 0.000
PVX_123145 Plasmodium vivax PVX_123145 N 0.000
PF08_0086 Plasmodium falciparum PF08_0086 N 0.000
e_gw1.11.236.1 Trichoderma atroviride e_gw1.11.236.1 N 0.746
e_gw1.20.215.1 Phycomyces blakesleeanus e_gw1.20.215.1 N 0.761
e_gw1.4.370.1 Sporobolomyces roseus e_gw1.4.370.1 N 0.732
estExt_fgenesh3_pg.C_910016 Postia placenta estExt_fgenesh3_pg.C_910016 N 0.718
estExt_fgenesh2_pm.C_1170007 Branchiostoma floridae estExt_fgenesh2_pm.C_1170007 N 0.718
estExt_fgenesh1_kg.C_40083 Melampsora laricis populina estExt_fgenesh1_kg.C_40083 N 0.000
estExt_fgenesh1_kg.C_170006 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_170006 N 0.775
e_gww2.22.65.1 Phanerochaete chrysosporium e_gww2.22.65.1 N 0.732
e_gww1.4.788.1 Laccaria bicolor e_gww1.4.788.1 N 0.704
e_gw.42.57.1 Nematostella vectensis e_gw.42.57.1 N 0.775
e_gw1.6.80.1 Monosiga brevicollis e_gw1.6.80.1 N 0.789
e_gw1.6.1078.1 Selaginella moellendorfii e_gw1.6.1078.1 N 0.000
CMU_026350 Cryptosporidium muris CMU_026350 N 0.000
cyp6 Schizosaccharomyces pombe SPBC17G9.05 N 0.761
GF18772 Drosophila ananassae FBgn0095789 N 0.775
CG5808 Drosophila melanogaster FBgn0027617 N 0.761
sig-7 Caenorhabditis elegans F39H2.2 N 0.958
ppil4 Xenopus tropicalis ENSXETG00000021385 N 0.789
PPIL4 Vicugna pacos ENSVPAG00000005157 N 0.746
PPIL4 Tursiops truncatus ENSTTRG00000006014 N 0.746
PPIL4 Takifugu rubripes ENSTRUG00000006670 N 0.775
PPIL4 Tetraodon nigroviridis ENSTNIG00000002706 N 0.775
PPIL4 Taeniopygia guttata ENSTGUG00000010655 N 0.746
GG12319 Drosophila erecta FBgn0104609 N 0.761
GH18460 Drosophila grimshawi FBgn0125927 N 0.775
GI24038 Drosophila mojavensis FBgn0146761 N 0.775
PHUM268300 Pediculus humanus PHUM268300 N 0.732
NCU10166 Neurospora crassa NCU10166 N 0.803
GA26948-RA Drosophila pseudoobscura FBgn0248319 N 0.775
GE10772 Drosophila yakuba FBgn0228614 N 0.761
GK13166 Drosophila willistoni FBgn0215175 N 0.761
GJ23668 Drosophila virilis FBgn0210765 N 0.775
GD18267 Drosophila simulans FBgn0189800 N 0.761
GM23461 Drosophila sechellia FBgn0178328 N 0.761
GL13859 Drosophila persimilis FBgn0151464 N 0.775
PPIL4 Spermophilus tridecemlineatus ENSSTOG00000013980 N 0.718
estExt_Genewise1.C_180101 Capitella teleta estExt_Genewise1.C_180101 N 0.718
XP_787384.2 Strongylocentrotus purpuratus XP_787384.2 N 0.732
fgenesh1_pm.00868_#_101 Aspergillus carbonarius fgenesh1_pm.00868_#_101 N 0.746
estExt_Genewise1Plus.C_61472 Cryphonectria parasitica estExt_Genewise1Plus.C_61472 N 0.761
estExt_Genewise1Plus.C_11662 Tremella mesenterica estExt_Genewise1Plus.C_11662 N 0.775
estExt_fgeneshCV_pg.C_40316 Chlorella vulgaris estExt_fgeneshCV_pg.C_40316 N 0.732
estExt_fgenesh2_kg.C_140159 Agaricus bisporus estExt_fgenesh2_kg.C_140159 N 0.718
e_gw1.4.423.1 Coccomyxa C 169 e_gw1.4.423.1 N 0.732
e_gw1.4.2113.1 Pleurotus ostreatus e_gw1.4.2113.1 N 0.704
EDO07903.1 Babesia bovis EDO07903.1 N 0.000
Ame_R008665 Ailuropoda melanoleuca Ame_R008665 N 0.746
fgenesh2_pm.4_#_1016 Serpula lacrymans fgenesh2_pm.4_#_1016 N 0.732
fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA Heterobasidion annosum fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA N 0.704
GSTUMT00009813001 Tuber melanosporum GSTUMT00009813001 N 0.718
XP_782627.2 Strongylocentrotus purpuratus XP_782627.2 N 0.732
XP_001192414.1 Strongylocentrotus purpuratus XP_001192414.1 N 0.732
XP_001180629.1 Strongylocentrotus purpuratus XP_001180629.1 N 0.732
Smp_165540 Schistosoma mansoni Smp_165540 N 0.718
PMAA_010740 Penicillium marneffei PMAA_010740 N 0.732
Pc21g11960 Penicillium chrysogenum Pc21g11960 N 0.732
Pa_2_13850 Podospora anserina Pa_2_13850 N 0.789
Minc10084 Meloidogyne incognita Minc10084 N 0.761
gw1.12.00.150.1 Ostreococcus tauri gw1.12.00.150.1 N 0.000
AB03196.1 Alternaria brassicicola AB03196.1 N 0.775
3821.m00489 Tetrahymena thermophila 3821.m00489 N 0.000
fgenesh1_pm.C_scaffold_3000471 Trichoderma virens fgenesh1_pm.C_scaffold_3000471 N 0.732
fgenesh1_pm.C_scaffold_1000049 Schizophyllum commune fgenesh1_pm.C_scaffold_1000049 N 0.718
EuGene.1200010297 Ostreococcus RCC809 EuGene.1200010297 N 0.704
estExt_GeneWisePlus.C_270056 Trichoderma reesei estExt_GeneWisePlus.C_270056 N 0.746
estExt_Genewise1Plus.C_chr_40303 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_40303 N 0.746
estExt_Genewise1Plus.C_40585 Mucor circinelloides estExt_Genewise1Plus.C_40585 N 0.732
estExt_Genewise1Plus.C_40228 Batrachochytrium dendrobatidis estExt_Genewise1Plus.C_40228 N 0.704
estExt_Genewise1Plus.C_12820 Neurospora discreta estExt_Genewise1Plus.C_12820 N 0.803
estExt_Genewise1.C_30053 Myceliophthora thermophila estExt_Genewise1.C_30053 N 0.789
fgenesh1_pm.C_scaffold_9000117 Mycosphaerella fijiensis fgenesh1_pm.C_scaffold_9000117 N 0.732
fgenesh1_pm.sca_11_chr8_3_0000173 Nectria haematococca fgenesh1_pm.sca_11_chr8_3_0000173 N 0.732
fgeneshTA2_pg.C_scaffold_8000290 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000290 N 0.732
BGIBMGA008977 Bombyx mori BGIBMGA008977 N 0.817
Sjc_0091550 Schistosoma japonicum Sjc_0091550 N 0.761
PredSwiss_CON599.3 Pneumocystis carinii PredSwiss_CON599.3 N 0.746
PredSwiss_ASS2010_933.2 Pneumocystis carinii PredSwiss_ASS2010_933.2 N 0.746
EAT81165.2 Phaeosphaeria nodorum EAT81165.2 N 0.761
PierreAnnot2.00074 Micromonas pusilla PierreAnnot2.00074 N 0.000
gwEuk.12.143.1 Ostreococcus lucimarinus gwEuk.12.143.1 N 0.718
gw1.13.70.1 Lottia gigantea gw1.13.70.1 N 0.789
gw1.1.256.1 Neurospora tetrasperma gw1.1.256.1 N 0.803
estExt_Genewise1.C_23809 Thielavia terrestris estExt_Genewise1.C_23809 N 0.761
PPIL4 Sorex araneus ENSSARG00000011244 N 0.746
AAEL005541 Aedes aegypti AAEL005541 N 0.803
SPPG_03169 Spizellomyces punctatus SPPG_03169 N 0.817
SPOG_01415 Schizosaccharomyces cryophilus SPOG_01415 N 0.775
SOCG_02586 Schizosaccharomyces octosporus SOCG_02586 N 0.761
SNOG_11457 Stagonospora nodorum SNOG_11457 N 0.761
SJAG_00470 Schizosaccharomyces japonicus SJAG_00470 N 0.789
RO3G_06974 Rhizopus oryzae RO3G_06974 N 0.732
PTTG_06854 Puccinia triticina PTTG_06854 N 0.000
PTSG_07932 Salpingoeca rosetta PTSG_07932 N 0.732
PTRG_04608 Pyrenophora tritici repentis PTRG_04608 N 0.761
TEQG_07016 Trichophyton equinum TEQG_07016 N 0.718
TERG_06028 Trichophyton rubrum TERG_06028 N 0.718
TRV_03115 Trichophyton verrucosum TRV_03115 N 0.718
nasonia_NCBI_hmm783174 Nasonia vitripennis nasonia_NCBI_hmm783174 N 0.789
DGIL_AUG5s502g5t1 Acyrtosiphon pisum DGIL_AUG5s502g5t1 N 0.775
amel4_ncbi_hmm35613 Apis mellifera amel4_ncbi_hmm35613 N 0.803
amel4_ncbi_hmm11961 Apis mellifera amel4_ncbi_hmm11961 N 0.803
WUBG_04730 Wuchereria bancrofti WUBG_04730 N 0.817
VDBG_02138 Verticillium albo atrum VDBG_02138 N 0.718
VDAG_02606 Verticillium dahliae VDAG_02606 N 0.732
UREG_02113 Uncinocarpus reesii UREG_02113 N 0.746
UM03490 Ustilago maydis UM03490 N 0.000
PGTG_14680 Puccinia graminis PGTG_14680 N 0.000
PGTG_10482 Puccinia graminis PGTG_10482 N 0.000
CNBG_1409 Cryptococcus neoformans CNBG_1409 N 0.775
CIMG_07762 Coccidioides immitis CIMG_07762 N 0.746
CHGG_06839 Chaetomium globosum CHGG_06839 N 0.789
CAOG_07850 Capsaspora owczarzaki CAOG_07850 N 0.000
BDBG_04009 Blastomyces dermatitidis BDBG_04009 N 0.746
BC1G_10007 Botrytis cinerea BC1G_10007 N 0.775
ARB_04672 Arthroderma benhamiae ARB_04672 N 0.718
AMSG_10031 Thecamonas trahens AMSG_10031 N 0.000
AMAG_02172 Allomyces macrogynus AMAG_02172 N 0.000
CpipJ_CPIJ000912 Culex pipiens CpipJ_CPIJ000912 N 0.803
CPSG_09333 Coccidioides posadasii CPSG_09333 N 0.746
FGSG_04479 Fusarium graminearum FGSG_04479 N 0.732
PABG_01156 Paracoccidioides brasiliensis PABG_01156 N 0.746
MGYG_05886 Microsporum gypseum MGYG_05886 N 0.732
MGG_10681 Magnaporthe oryzae MGG_10681 N 0.732
MCYG_06073 Microsporum canis MCYG_06073 N 0.732
LOAG_08216 Loa loa LOAG_08216 N 0.817
HCAG_04417 Histoplasma capsulatum HCAG_04417 N 0.746
GLRG_06614 Colletotrichum graminicola GLRG_06614 N 0.732
FVEG_11166 Fusarium verticillioides FVEG_11166 N 0.746
FOXG_13736 Fusarium oxysporum FOXG_13736 N 0.746
AMAG_00661 Allomyces macrogynus AMAG_00661 N 0.000
Ppil4 Rattus norvegicus ENSRNOG00000015552 N 0.746
PPIL4 Meleagris gallopavo ENSMGAG00000012596 N 0.761
PPIL4 Loxodonta africana ENSLAFG00000026804 N 0.746
PPIL4 Gorilla gorilla ENSGGOG00000009686 N 0.746
PPIL4 Gallus gallus ENSGALG00000012364 N 0.761
PPIL4 Gasterosteus aculeatus ENSGACG00000006639 N 0.817
PPIL4 Homo sapiens ENSG00000131013 N 0.746
PPIL4 Erinaceus europaeus ENSEEUG00000000959 N 0.732
PPIL4 Equus caballus ENSECAG00000021819 N 0.746
ppil4 Danio rerio ENSDARG00000043854 N 0.775
PPIL4 Microcebus murinus ENSMICG00000006287 N 0.746
PPIL4 Myotis lucifugus ENSMLUG00000002766 N 0.746
PPIL4 Macaca mulatta ENSMMUG00000023067 N 0.746
PPIL4 Pteropus vampyrus ENSPVAG00000000746 N 0.746
PPIL4 Pan troglodytes ENSPTRG00000018692 N 0.746
PPIL4 Procavia capensis ENSPCAG00000008203 N 0.746
PPIL4 Oryzias latipes ENSORLG00000015310 N 0.803
PPIL4 Ochotona princeps ENSOPRG00000005619 N 0.746
PPIL4 Oryctolagus cuniculus ENSOCUG00000007696 N 0.746
ENSOANG00000001063 Ornithorhynchus anatinus ENSOANG00000001063 N 0.761
Ppil4 Mus musculus ENSMUSG00000015757 N 0.746
PPIL4 Monodelphis domestica ENSMODG00000016825 N 0.746
ENSCSAVG00000010619 Ciona savignyi ENSCSAVG00000010619 N 0.789
PPIL4 Cavia porcellus ENSCPOG00000014614 N 0.746
AO090038000594 Aspergillus oryzae CADAORAG00009343 N 0.746
ANIA_09095 Aspergillus nidulans CADANIAG00009519 N 0.761
An12g00490 Aspergillus niger CADANGAG00009498 N 0.746
AFUA_7G02170 Aspergillus fumigatus CADAFUAG00001177 N 0.746
AFLA_071340 Aspergillus flavus CADAFLAG00008558 N 0.746
ACLA_065360 Aspergillus clavatus CADACLAG00006149 N 0.746
BRADI2G41160 Brachypodium distachyon BRADI2G41160 N 0.000
BGIOSIBCE022975 Oryza indica BGIOSIBCE022975 N 0.000
AGAP008136 Anopheles gambiae AGAP008136 N 0.803
ATEG_01850 Aspergillus terreus CADATEAG00001841 N 0.746
NFIA_114890 Neosartorya fischeri CADNFIAG00010434 N 0.746
PPIL4 Callithrix jacchus ENSCJAG00000019613 N 0.722
PPIL4 Choloepus hoffmanni ENSCHOG00000000236 N 0.000
Q6JDI1_CANFA Canis familiaris ENSCAFG00000000379 N 0.746
A6QP53_BOVIN Bos taurus ENSBTAG00000016980 N 0.746
PPIL4 Anolis carolinensis ENSACAG00000006936 N 0.746
CRE29496 Caenorhabditis remanei CRE29496 N 0.944
CPIJ000912 Culex quinquefasciatus CPIJ000912 N 0.803
CJA06296 Caenorhabditis japonica CJA06296 N 0.930
CBN08292 Caenorhabditis brenneri CBN08292 N 0.958
AAEL005690 Aedes aegypti AAEL005690 N 0.803