CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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G3BP2
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000017342
T37550_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
G3BP2
M021_0.6
Homo sapiens
AGGAUDR
RNAcompete
Ray et al.(2013)
RNCMPT00021
0.896
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000022910
RRM
335
401
LFVGNLPHDIDESELKDFFMTYGTVVELRINTKGVGGKLPNFGFVVFDDSDPVQRILGAKPIMFRGE
ENSGACP00000022911
RRM
301
367
LFVGNLPHDIDESELKDFFMTYGTVVELRINTKGVGGKLPNFGFVVFDDSDPVQRILGAKPIMFRGE
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
89 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
G3BP2
Homo sapiens
ENSG00000138757
D
0.896
G3BP1
Homo sapiens
ENSG00000145907
D
0.731
G3bp1
Mus musculus
ENSMUSG00000018583
I
0.701
G3BP2
Procavia capensis
ENSPCAG00000015109
I
0.896
ENSPPYG00000014846
Pongo pygmaeus
ENSPPYG00000014846
I
0.896
ENSPPYG00000015968
Pongo pygmaeus
ENSPPYG00000015968
I
0.731
G3BP2
Pan troglodytes
ENSPTRG00000016175
I
0.896
G3BP1
Pan troglodytes
ENSPTRG00000017438
I
0.731
G3BP2
Pteropus vampyrus
ENSPVAG00000010166
I
0.896
G3BP1
Pteropus vampyrus
ENSPVAG00000017250
I
0.731
G3BP1
Oryzias latipes
ENSORLG00000011422
I
0.701
G3BP2
Oryzias latipes
ENSORLG00000007012
I
0.910
G3bp2
Mus musculus
ENSMUSG00000029405
I
0.896
ENSOANG00000004714
Ornithorhynchus anatinus
ENSOANG00000004714
I
0.896
G3BP1
Ornithorhynchus anatinus
ENSOANG00000005110
I
0.746
G3BP2
Oryctolagus cuniculus
ENSOCUG00000003262
I
0.896
ENSOCUG00000022069
Oryctolagus cuniculus
ENSOCUG00000022069
I
0.731
ENSOCUG00000022143
Oryctolagus cuniculus
ENSOCUG00000022143
I
0.731
G3BP2
Otolemur garnettii
ENSOGAG00000000157
I
0.896
G3BP2
Ochotona princeps
ENSOPRG00000006307
I
0.896
G3BP1
Ochotona princeps
ENSOPRG00000010562
I
0.731
ENSRNOG00000001595
Rattus norvegicus
ENSRNOG00000001595
I
0.746
G3bp2
Rattus norvegicus
ENSRNOG00000002433
I
0.896
G3bp1
Rattus norvegicus
ENSRNOG00000013186
I
0.716
G3BP2
Tursiops truncatus
ENSTTRG00000013795
I
0.881
G3BP1
Vicugna pacos
ENSVPAG00000004461
I
0.731
G3BP2
Vicugna pacos
ENSVPAG00000010710
I
0.896
g3bp2
Xenopus tropicalis
ENSXETG00000000334
I
0.866
g3bp1
Xenopus tropicalis
ENSXETG00000010712
I
0.776
e_gw.517.12.1
Branchiostoma floridae
e_gw.517.12.1
I
0.714
e_gw.9.159.1
Branchiostoma floridae
e_gw.9.159.1
I
0.714
Ame_R007258
Ailuropoda melanoleuca
Ame_R007258
I
0.896
Ame_R008928
Ailuropoda melanoleuca
Ame_R008928
I
0.731
G3BP1
Tarsius syrichta
ENSTSYG00000004570
I
0.716
G3BP2
Takifugu rubripes
ENSTRUG00000011405
I
0.910
G3BP2
Sorex araneus
ENSSARG00000009503
I
0.896
ENSSSCG00000017079
Sus scrofa
ENSSSCG00000017079
I
0.716
ENSSSCG00000017080
Sus scrofa
ENSSSCG00000017080
I
0.716
G3BP1
Tupaia belangeri
ENSTBEG00000004386
I
0.731
ENSTBEG00000008258
Tupaia belangeri
ENSTBEG00000008258
I
0.881
ENSTBEG00000012323
Tupaia belangeri
ENSTBEG00000012323
I
0.896
G3BP1
Taeniopygia guttata
ENSTGUG00000000753
I
0.761
G3BP2
Taeniopygia guttata
ENSTGUG00000001561
I
0.910
G3BP2
Tetraodon nigroviridis
ENSTNIG00000011044
I
0.910
AAH76729
Xenopus laevis
AAH76729
I
0.821
G3BP1
Anolis carolinensis
ENSACAG00000009792
I
0.701
ENSDARG00000011704
Danio rerio
ENSDARG00000011704
I
0.940
g3bp2
Danio rerio
ENSDARG00000014790
I
0.896
G3BP2
Danio rerio
ENSDARG00000074572
I
0.940
G3BP2
Dasypus novemcinctus
ENSDNOG00000012491
I
0.881
G3BP1
Dasypus novemcinctus
ENSDNOG00000018758
I
0.731
G3bp2
Dipodomys ordii
ENSDORG00000004825
I
0.896
LOC100060090
Equus caballus
ENSECAG00000003368
I
0.731
G3BP2
Equus caballus
ENSECAG00000007917
I
0.896
G3BP2
Cavia porcellus
ENSCPOG00000012052
I
0.896
ENSCPOG00000006626
Cavia porcellus
ENSCPOG00000006626
I
0.716
LOC100413275
Callithrix jacchus
ENSCJAG00000019897
I
0.896
Q2KJ17_BOVIN
Bos taurus
ENSBTAG00000014041
I
0.896
G3BP1_BOVIN
Bos taurus
ENSBTAG00000020309
I
0.731
G3BP2
Canis familiaris
ENSCAFG00000008371
I
0.896
G3BP2
Anolis carolinensis
ENSACAG00000008695
I
0.881
G3BP1
Canis familiaris
ENSCAFG00000017841
I
0.731
G3BP2
Choloepus hoffmanni
ENSCHOG00000005346
I
0.866
ENSCHOG00000010802
Choloepus hoffmanni
ENSCHOG00000010802
I
0.731
G3BP1
Callithrix jacchus
ENSCJAG00000015407
I
0.731
G3BP1
Erinaceus europaeus
ENSEEUG00000012278
I
0.731
G3BP2
Erinaceus europaeus
ENSEEUG00000013436
I
0.896
G3BP2
Echinops telfairi
ENSETEG00000016219
I
0.851
G3BP2
Meleagris gallopavo
ENSMGAG00000007221
I
0.910
G3BP2
Microcebus murinus
ENSMICG00000007795
I
0.896
G3BP1
Microcebus murinus
ENSMICG00000012235
I
0.731
G3BP1
Myotis lucifugus
ENSMLUG00000001581
I
0.731
G3BP2
Myotis lucifugus
ENSMLUG00000004753
I
0.896
G3BP2
Macaca mulatta
ENSMMUG00000002153
I
0.896
G3BP1
Macaca mulatta
ENSMMUG00000014701
I
0.731
XM_001369493.1
Monodelphis domestica
ENSMODG00000008993
I
0.701
G3BP2
Monodelphis domestica
ENSMODG00000019205
I
0.896
G3BP1
Meleagris gallopavo
ENSMGAG00000005963
I
0.761
G3BP2
Macropus eugenii
ENSMEUG00000004126
I
0.896
G3BP2
Loxodonta africana
ENSLAFG00000023321
I
0.896
G3BP1
Loxodonta africana
ENSLAFG00000009182
I
0.731
G3BP2
Gorilla gorilla
ENSGGOG00000014947
I
0.896
G3BP2
Gallus gallus
ENSGALG00000010882
I
0.910
G3BP1
Echinops telfairi
ENSETEG00000017447
I
0.731
G3BP1
Gasterosteus aculeatus
ENSGACG00000016848
I
0.701
G3BP2
Felis catus
ENSFCAG00000010124
I
0.896
Q5ZMN1_CHICK
Gallus gallus
ENSGALG00000004160
N
0.703
e_gw1.11.491.1
Lottia gigantea
e_gw1.11.491.1
N
0.716