CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM39
(
Procavia capensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPCAG00000008764
T40359_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPCAP00000008207
RRM
138
206
VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPI
ENSPCAP00000008207
RRM
235
305
LYVGSLHFNITEDMLRGIFEPFGRXXXXXXXXXXXXXXXXXXXXXXFSDSECAKKALEQLNGFELAGRPMK
ENSPCAP00000008207
RRM
428
485
EIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMIT
Links
Other
RRM
family RBPs
Other
Procavia capensis
RBPs
43 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM42
Homo sapiens
ENSG00000126254
D
0.000
ENSXETG00000017599
Xenopus tropicalis
ENSXETG00000017599
D
0.000
RBM42
Tarsius syrichta
ENSTSYG00000014688
I
0.000
RBM42
Takifugu rubripes
ENSTRUG00000004663
I
0.000
RBM42
Tetraodon nigroviridis
ENSTNIG00000011669
I
0.000
RBM42
Spermophilus tridecemlineatus
ENSSTOG00000013050
I
0.000
RBM42
Sus scrofa
ENSSSCG00000002905
I
0.000
RBM42
Sorex araneus
ENSSARG00000010724
I
0.000
Rbm42
Rattus norvegicus
ENSRNOG00000024278
I
0.000
RBM42
Pteropus vampyrus
ENSPVAG00000012815
I
0.000
RBM42
Pan troglodytes
ENSPTRG00000010852
I
0.000
ENSPPYG00000009871
Pongo pygmaeus
ENSPPYG00000009871
I
0.000
AAI29698
Xenopus laevis
AAI29698
I
0.000
PHUM106890
Pediculus humanus
PHUM106890
I
0.000
A2VDB3
Xenopus laevis
A2VDB3
I
0.000
XP_002167334.1
Hydra magnipapillata
XP_002167334.1
I
0.000
Ame_R009099
Ailuropoda melanoleuca
Ame_R009099
I
0.000
BGIBMGA005213
Bombyx mori
BGIBMGA005213
I
0.000
estExt_Genewise1Plus.C_1180017
Capitella teleta
estExt_Genewise1Plus.C_1180017
I
0.000
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.000
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.000
e_gw1.30.201.1
Daphnia pulex
e_gw1.30.201.1
I
0.000
e_gw1.16.225.1
Lottia gigantea
e_gw1.16.225.1
I
0.000
Aqu1.218430
Amphimedon queenslandica
Aqu1.218430
I
0.000
Ppa-tag-262
Pristionchus pacificus
PPA14507
I
0.000
RBM42
Procavia capensis
ENSPCAG00000013053
I
0.000
RBM42
Oryzias latipes
ENSORLG00000003387
I
0.000
rbm42
Danio rerio
ENSDARG00000039910
I
0.000
RBM42
Cavia porcellus
ENSCPOG00000012365
I
0.000
RBM42
Callithrix jacchus
ENSCJAG00000010220
I
0.000
ENSCING00000006773
Ciona intestinalis
ENSCING00000006773
I
0.000
RBM42
Canis familiaris
ENSCAFG00000006925
I
0.000
RBM42_BOVIN
Bos taurus
ENSBTAG00000013440
I
0.000
RBM42
Anolis carolinensis
ENSACAG00000005495
I
0.000
AGAP010200
Anopheles gambiae
AGAP010200
I
0.000
amel4_ncbi_hmm2520
Apis mellifera
amel4_ncbi_hmm2520
I
0.000
SPPG_03010
Spizellomyces punctatus
SPPG_03010
I
0.000
LOC100051102
Equus caballus
ENSECAG00000018215
I
0.000
RBM42
Erinaceus europaeus
ENSEEUG00000004841
I
0.000
RBM42
Gasterosteus aculeatus
ENSGACG00000004170
I
0.000
RBM42
Ochotona princeps
ENSOPRG00000001229
I
0.000
RBM42
Otolemur garnettii
ENSOGAG00000004144
I
0.000
RBM42
Oryctolagus cuniculus
ENSOCUG00000003337
I
0.000
Rbm42
Mus musculus
ENSMUSG00000036733
I
0.000
RBM42
Monodelphis domestica
ENSMODG00000013957
I
0.000
RBM42
Macaca mulatta
ENSMMUG00000018954
I
0.000
RBM42
Myotis lucifugus
ENSMLUG00000011334
I
0.000
RBM42
Microcebus murinus
ENSMICG00000009880
I
0.000
ENSMEUG00000016300
Macropus eugenii
ENSMEUG00000016300
I
0.000
RBM42
Gorilla gorilla
ENSGGOG00000009972
I
0.000
PTSG_04228
Salpingoeca rosetta
PTSG_04228
I
0.000
SNAPOd2T00026674001
Oikopleura dioica
SNAPOd2T00026674001
N
0.000