SNRPB2 (Sorex araneus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSARG00000002681 T41284_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.806
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.791
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.791
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.791
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.791
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.791
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.791
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.791
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.791
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSARP00000002407 RRM 9 80
ENSSARP00000002407 RRM 153 219

Links

Other RRM family RBPs
Other Sorex araneus RBPs

118 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
snf Drosophila melanogaster FBgn0003449 D 0.806
SNRPA Homo sapiens ENSG00000077312 D 0.791
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 1.000
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.791
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 1.000
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.978
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.849
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.835
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.770
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.835
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.799
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 1.000
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 1.000
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.777
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 1.000
SNRPB2 Sus scrofa ENSSSCG00000007081 I 1.000
SNRPA Oryzias latipes ENSORLG00000006536 I 0.777
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.827
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.993
SNRPA Procavia capensis ENSPCAG00000012325 I 0.799
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.791
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 1.000
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.791
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 1.000
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.791
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.964
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.791
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 1.000
SNRPA Sus scrofa ENSSSCG00000002998 I 0.791
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 1.000
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.921
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.820
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.813
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.813
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.813
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.799
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.791
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.791
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 1.000
AAH44979 Xenopus laevis AAH44979 I 0.777
AAH72799 Xenopus laevis AAH72799 I 0.914
AAH84107 Xenopus laevis AAH84107 I 0.885
CAA41021 Xenopus laevis CAA41021 I 0.777
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.727
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.777
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.705
snf Drosophila mojavensis FBgn0069598 I 0.813
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.806
GF21334 Drosophila ananassae FBgn0098336 I 0.806
GG18748 Drosophila erecta FBgn0110957 I 0.806
GH24608 Drosophila grimshawi FBgn0132064 I 0.813
GL14287 Drosophila persimilis FBgn0151892 I 0.806
GM12396 Drosophila sechellia FBgn0167333 I 0.806
GJ16850 Drosophila virilis FBgn0204029 I 0.813
GK25839 Drosophila willistoni FBgn0227798 I 0.813
GE16390 Drosophila yakuba FBgn0233919 I 0.806
105398 Helobdella robusta 105398 I 0.705
186191 Helobdella robusta 186191 I 0.763
P45429 Xenopus laevis P45429 I 0.777
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.813
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.719
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.777
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.906
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.957
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 1.000
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.791
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.734
snrpa Danio rerio ENSDARG00000018890 I 0.784
snrpb2 Danio rerio ENSDARG00000039424 I 0.842
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.791
LOC100068274 Equus caballus ENSECAG00000013141 I 0.791
LOC100050830 Equus caballus ENSECAG00000018407 I 1.000
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 1.000
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.770
LOC477148 Canis familiaris ENSCAFG00000005520 I 1.000
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.820
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.755
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.835
AAEL002980 Aedes aegypti AAEL002980 I 0.813
AAEL014167 Aedes aegypti AAEL014167 I 0.813
AGAP011637 Anopheles gambiae AGAP011637 I 0.791
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.813
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.964
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.806
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.791
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 1.000
SNRPA Canis familiaris ENSCAFG00000005091 I 0.791
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.777
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.942
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.791
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.993
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 1.000
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.791
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.978
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.791
Snrpb2 Mus musculus ENSMUSG00000008333 I 1.000
Snrpa Mus musculus ENSMUSG00000061479 I 0.799
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 1.000
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.993
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.748
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.791
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 1.000
SNRPB2 Microcebus murinus ENSMICG00000015404 I 1.000
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.978
SNRPA Echinops telfairi ENSETEG00000019205 I 0.755
SNRPA Felis catus ENSFCAG00000016209 I 0.791
SNRPB2 Homo sapiens ENSG00000125870 I 1.000
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.763
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.820
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.978
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.791
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 1.000
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 1.000
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.705
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.892
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.791
ENSTGUG00000014863 Taeniopygia guttata ENSTGUG00000014863 N 0.712
SNRPB2 Dasypus novemcinctus ENSDNOG00000014137 N 0.842