CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM23
(
Tetraodon nigroviridis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTNIG00000005223
T42030_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000007899
RRM
160
218
RPRDLEDFFSAVGKVRDVRMISDRSSRRSKGIAYIEFVEASSVPLAIGLTGQRLLGVPI
ENSTNIP00000007899
RRM
242
312
LYVGSLHFNITEEMLRGIFEPFGRIENIQLMVDSDTGRSKGYGFITFADAECAKKALEQLNGFELAGRPMK
ENSTNIP00000007899
RRM
425
480
QHNVIEECNKHGGVVHIYVDKDSAEGNVYIKCPTIPAAMAAVNVLHGRFFNGKLIT
Links
Other
RRM
family RBPs
Other
Tetraodon nigroviridis
RBPs
41 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
POPTR_0014s17010
Populus trichocarpa
POPTR_0014s17010
N
0.000
cassava5529.m1
Manihot esculenta
cassava5529.m1
N
0.000
Cucsa.120120
Cucumis sativus
Cucsa.120120
N
0.000
Glyma13g03840.1
Glycine max
Glyma13g03840.1
N
0.000
Glyma20g10360.1
Glycine max
Glyma20g10360.1
N
0.000
mgf003454m
Mimulus guttatus
mgf003454m
N
0.000
Medtr3g111300
Medicago truncatula
Medtr3g111300
N
0.000
MDP0000126227
Malus x domestica
MDP0000126227
N
0.000
PDK_20s1415581g001
Phoenix dactylifera
PDK_20s1415581g001
N
0.000